1 Response_reg#1
4-108 aa · 105 aa · 43.6% of protein
Raw token
Response_reg:4:4.69e-17:108:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS17105
Response regulator LytTR family
Roseburia faecis · GCF_009718405
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009718405#GMD29_RS17105Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-226 aa · 82 aa · 34.0% of protein
Raw token
LytTR:145:1.91e-16:226:87:98- Raw architecture: Response_reg:4:4.69e-17:108:107:111#LytTR:145:1.91e-16:226:87:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009718405::NZ_WNAK01000068.1::G00052
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span617-1342Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_17040RefSeq proteinWP_155177785.1
Context group ID
GCF_009718405::NZ_WNAK01000068.1::G00052Context members
GMD29_RS17105
Partner locus tags
GMD29_RS17105
Partner old locus tags
GMD29_17040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_155177785.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS17105Primary locus identifier stored in the genes table.
Old locus tagGMD29_17040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000068.1Sequence record reported by the local genomic context database.
Genomic interval617-1 342 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span617-1 342 ntGCF_009718405::NZ_WNAK01000068.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000068.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000068.1All displayed genes belong to this local TCS context.
Neighborhood span617-1 342 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
617 nt1 342 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GMD29_RS17105GCF_009718405#GMD29_RS17105
RRLytTRCurrent focus
617-1 342 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS17105The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0869516
Simplified PFAM architecture for RROC_0869516
PFAM domain coverage: 189 / 241 aa (78.4%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-109] | LytTR[144-226]
- Domain count: 2
- Matched identifier: RROC_0869516
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; LytTR 144-226 ; LytTR 144-226
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS17105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key