1 Response_reg#1
4-113 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:4:1.5e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS01205
Response regulator OmpR family
Roseburia faecis · GCF_009718405
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009718405#GMD29_RS01205Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:150:1.37e-33:226:77:77- Raw architecture: Response_reg:4:1.5e-39:113:111:111#Trans_reg_C:150:1.37e-33:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009718405::NZ_WNAK01000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17359-20581Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_01205RefSeq proteinWP_022045676.1
Context group ID
GCF_009718405::NZ_WNAK01000002.1::G00025Context members
GMD29_RS01200GMD29_RS01205
Partner locus tags
GMD29_RS01200GMD29_RS01205
Partner old locus tags
GMD29_01200GMD29_01205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022045676.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KIK1Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KIK1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS01205Primary locus identifier stored in the genes table.
Old locus tagGMD29_01205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000002.1Sequence record reported by the local genomic context database.
Genomic interval19 883-20 581 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 359-20 581 ntGCF_009718405::NZ_WNAK01000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000002.1All displayed genes belong to this local TCS context.
Neighborhood span17 359-20 581 nt3 223 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 359 nt20 581 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GMD29_RS01200GCF_009718405#GMD29_RS01200
HKClassic
17 359-19 890 nt · Reverse (-)
GMD29_RS01205GCF_009718405#GMD29_RS01205
RROmpRCurrent focus
19 883-20 581 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS15455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1129411
Simplified PFAM architecture for RROC_1129411
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[150-226]
- Domain count: 2
- Matched identifier: RROC_1129411
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 150-226 ; Trans_reg_C 150-226
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS15455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key