1 PBPb#1
40-257 aa · 218 aa · 20.2% of protein
Raw token
PBPb:40:1.55e-29:257:231:219P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD72_RS10410
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_009679775
ClassHKTypeHybridLength1079 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009679775#GKD72_RS10410Stable P2CS identifier used across views.
GenomeGCF_009679775Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
PBPbHisKAHATPase_cResponse_reg
Protein length1079 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage837 / 1079 aa (77.6%)Merged over positioned domains only.
Domain description2 PBPb,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1079 aa
Domain-by-domain annotation6 items
2 PBPb#2
279-481 aa · 203 aa · 18.8% of protein
Raw token
PBPb:279:0.0000000000000369:481:213:2193 HisKA#3
568-634 aa · 67 aa · 6.2% of protein
Raw token
HisKA:568:3.69e-19:634:67:644 HATPase_c#4
682-798 aa · 117 aa · 10.8% of protein
Raw token
HATPase_c:682:1.35e-32:798:117:1095 Response_reg#5
818-931 aa · 114 aa · 10.6% of protein
Raw token
Response_reg:818:6.87e-21:931:114:1116 Response_reg#6
959-1076 aa · 118 aa · 10.9% of protein
Raw token
Response_reg:959:8.26e-33:1076:118:111- Raw architecture: PBPb:40:1.55e-29:257:231:219#PBPb:279:0.0000000000000369:481:213:219#HisKA:568:3.69e-19:634:67:64#HATPase_c:682:1.35e-32:798:117:109#Response_reg:818:6.87e-21:931:114:111#Response_reg:959:8.26e-33:1076:118:111
- Domain description: 2 PBPb,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009679775::NZ_WKPW01000014.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span40815-44054Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD72_10405RefSeq proteinWP_015536986.1
Context group ID
GCF_009679775::NZ_WKPW01000014.1::G00003Context members
GKD72_RS10410
Partner locus tags
GKD72_RS10410
Partner old locus tags
GKD72_10405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015536986.1Primary protein accession used for annex mappings.
UniProt accessionD4K8G6Primary UniProt accession resolved in the annex database.
UniProt IDD4K8G6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD72_RS10410Primary locus identifier stored in the genes table.
Old locus tagGKD72_10405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKPW01000014.1Sequence record reported by the local genomic context database.
Genomic interval40 815-44 054 nt3 240 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 815-44 054 ntGCF_009679775::NZ_WKPW01000014.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679775::NZ_WKPW01000014.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKPW01000014.1All displayed genes belong to this local TCS context.
Neighborhood span40 815-44 054 nt3 240 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 815 nt44 054 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GKD72_RS10410GCF_009679775#GKD72_RS10410
HKHybridCurrent focus
40 815-44 054 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003312465#C4Q21_RS04825Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0237314
Simplified PFAM architecture for HKOC_0237314
PFAM domain coverage: 611 / 1084 aa (56.4%)
1 aa1084 aa
SBP_bac_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: SBP_bac_3[53-249] | HisKA[573-639] | HATPase_c[687-803] | Response_reg[823-935] | Response_reg[964-1080]
- Domain count: 5
- Matched identifier: HKOC_0237314
- Positioned domains: SBP_bac_3 53-249 ; HisKA 573-639 ; HATPase_c 687-803 ; Response_reg 823-935 ; Response_reg 964-1080
Cluster members and taxonomy
Representative gene: GCF_003312465#C4Q21_RS04825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679775
AssemblyASM967977v1 · Scaffoldhaploid
Genome composition3 085 873 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 56 · HK 26 · RR 28CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key