1 PBPb#1
45-262 aa · 218 aa · 20.1% of protein
Raw token
PBPb:45:1.45e-29:262:231:219P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4Q21_RS04825
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_003312465
ClassHKTypeHybridLength1084 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003312465#C4Q21_RS04825Stable P2CS identifier used across views.
GenomeGCF_003312465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
PBPbHisKAHATPase_cResponse_reg
Protein length1084 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage837 / 1084 aa (77.2%)Merged over positioned domains only.
Domain description2 PBPb,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1084 aa
Domain-by-domain annotation6 items
2 PBPb#2
284-486 aa · 203 aa · 18.7% of protein
Raw token
PBPb:284:0.0000000000000356:486:213:2193 HisKA#3
573-639 aa · 67 aa · 6.2% of protein
Raw token
HisKA:573:3.55e-19:639:67:644 HATPase_c#4
687-803 aa · 117 aa · 10.8% of protein
Raw token
HATPase_c:687:1.31e-32:803:117:1095 Response_reg#5
823-936 aa · 114 aa · 10.5% of protein
Raw token
Response_reg:823:6.41e-21:936:114:1116 Response_reg#6
964-1081 aa · 118 aa · 10.9% of protein
Raw token
Response_reg:964:7.42e-33:1081:118:111- Raw architecture: PBPb:45:1.45e-29:262:231:219#PBPb:284:0.0000000000000356:486:213:219#HisKA:573:3.55e-19:639:67:64#HATPase_c:687:1.31e-32:803:117:109#Response_reg:823:6.41e-21:936:114:111#Response_reg:964:7.42e-33:1081:118:111
- Domain description: 2 PBPb,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003312465::NZ_CP030777.1::G00008
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span982955-986209Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4Q21_04825RefSeq proteinWP_113620915.1
Context group ID
GCF_003312465::NZ_CP030777.1::G00008Context members
C4Q21_RS04825
Partner locus tags
C4Q21_RS04825
Partner old locus tags
C4Q21_04825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_113620915.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2UNQ4Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2UNQ4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4Q21_RS04825Primary locus identifier stored in the genes table.
Old locus tagC4Q21_04825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030777.1Sequence record reported by the local genomic context database.
Genomic interval982 955-986 209 nt3 255 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span982 955-986 209 ntGCF_003312465::NZ_CP030777.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003312465::NZ_CP030777.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030777.1All displayed genes belong to this local TCS context.
Neighborhood span982 955-986 209 nt3 255 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
982 955 nt986 209 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4Q21_RS04825GCF_003312465#C4Q21_RS04825
HKHybridCurrent focus
982 955-986 209 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003312465#C4Q21_RS04825The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0237314
Simplified PFAM architecture for HKOC_0237314
PFAM domain coverage: 611 / 1084 aa (56.4%)
1 aa1084 aa
SBP_bac_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: SBP_bac_3[53-249] | HisKA[573-639] | HATPase_c[687-803] | Response_reg[823-935] | Response_reg[964-1080]
- Domain count: 5
- Matched identifier: HKOC_0237314
- Positioned domains: SBP_bac_3 53-249 ; HisKA 573-639 ; HATPase_c 687-803 ; Response_reg 823-935 ; Response_reg 964-1080
Cluster members and taxonomy
Representative gene: GCF_003312465#C4Q21_RS04825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003312465
AssemblyASM331246v1 · Complete Genomehaploid
Genome composition2 970 937 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 51 · HK 24 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key