1 Response_reg#1
5-113 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:5:9.28e-27:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD72_RS01405
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_009679775
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679775#GKD72_RS01405Stable P2CS identifier used across views.
GenomeGCF_009679775Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 226 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-224 aa · 78 aa · 34.5% of protein
Raw token
Trans_reg_C:147:1.05e-31:224:78:77- Raw architecture: Response_reg:5:9.28e-27:113:110:111#Trans_reg_C:147:1.05e-31:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679775::NZ_WKPW01000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span309317-311044Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD72_01405RefSeq proteinWP_129873409.1
Context group ID
GCF_009679775::NZ_WKPW01000001.1::G00012Context members
GKD72_RS01400GKD72_RS01405
Partner locus tags
GKD72_RS01400GKD72_RS01405
Partner old locus tags
GKD72_01400GKD72_01405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129873409.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD72_RS01405Primary locus identifier stored in the genes table.
Old locus tagGKD72_01405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKPW01000001.1Sequence record reported by the local genomic context database.
Genomic interval310 364-311 044 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span309 317-311 044 ntGCF_009679775::NZ_WKPW01000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679775::NZ_WKPW01000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKPW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span309 317-311 044 nt1 728 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
309 317 nt311 044 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD72_RS01400GCF_009679775#GKD72_RS01400
HKClassic
309 317-310 354 nt · Reverse (-)
GKD72_RS01405GCF_009679775#GKD72_RS01405
RROmpRCurrent focus
310 364-311 044 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004167405#EAI90_RS14235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1423059
Simplified PFAM architecture for RROC_1423059
PFAM domain coverage: 182 / 226 aa (80.5%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1423059
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_004167405#EAI90_RS14235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679775
AssemblyASM967977v1 · Scaffoldhaploid
Genome composition3 085 873 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 56 · HK 26 · RR 28CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key