1 HisKA_3#1
192-255 aa · 64 aa · 15.4% of protein
Raw token
HisKA_3:192:0.00000000000000638:255:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO89_RS04795
Histidine kinase, Classic
Bifidobacterium tissieri · GCF_008698165
ClassHKTypeClassicLength415 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698165#EMO89_RS04795Stable P2CS identifier used across views.
GenomeGCF_008698165Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length415 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 415 aa (41.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa415 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
299-405 aa · 107 aa · 25.8% of protein
Raw token
HATPase_c:299:0.000000000285:405:108:109- Raw architecture: HisKA_3:192:0.00000000000000638:255:64:68#HATPase_c:299:0.000000000285:405:108:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698165::NZ_RZUI01000004.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span166153-168132Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO89_04800RefSeq proteinWP_150381128.1
Context group ID
GCF_008698165::NZ_RZUI01000004.1::G00009Context members
EMO89_RS04795EMO89_RS04800
Partner locus tags
EMO89_RS04795EMO89_RS04800
Partner old locus tags
EMO89_04800EMO89_04805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150381128.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9ZYX6Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9ZYX6_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO89_RS04795Primary locus identifier stored in the genes table.
Old locus tagEMO89_04800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUI01000004.1Sequence record reported by the local genomic context database.
Genomic interval166 153-167 400 nt1 248 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span166 153-168 132 ntGCF_008698165::NZ_RZUI01000004.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698165::NZ_RZUI01000004.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span166 153-168 132 nt1 980 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
166 153 nt168 132 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO89_RS04795GCF_008698165#EMO89_RS04795
HKClassicCurrent focus
166 153-167 400 nt · Forward (+)
EMO89_RS04800GCF_008698165#EMO89_RS04800
RRNarL
167 449-168 132 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698165#EMO89_RS04795The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2312685
Simplified PFAM architecture for HKOC_2312685
PFAM domain coverage: 172 / 415 aa (41.4%)
1 aa415 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[192-257] | HATPase_c[299-404]
- Domain count: 2
- Matched identifier: HKOC_2312685
- Positioned domains: HisKA_3 192-257 ; HATPase_c 299-404
Cluster members and taxonomy
Representative gene: GCF_008698165#EMO89_RS04795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 162 · GCF_008698165
AssemblyASM869816v1 · Contighaploid
Genome composition3 032 244 bp · 61,0% GCBifidobacterium tissieri
Signal transduction countsGenes 32 · HK 11 · RR 17CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key