1 HisKA_3#1
237-297 aa · 61 aa · 6.9% of protein
Raw token
HisKA_3:237:1.94e-17:297:61:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO89_RS00535
Histidine kinase, Classic
Bifidobacterium tissieri · GCF_008698165
ClassHKTypeClassicLength882 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698165#EMO89_RS00535Stable P2CS identifier used across views.
GenomeGCF_008698165Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length882 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 882 aa (26.4%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa882 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
358-459 aa · 102 aa · 11.6% of protein
Raw token
HATPase_c:358:0.0000000000000629:459:117:1093 HisKA_3#3
786-855 aa · 70 aa · 7.9% of protein
Raw token
HisKA_3:786:0.0000533:855:70:68- Raw architecture: HisKA_3:237:1.94e-17:297:61:68#HATPase_c:358:0.0000000000000629:459:117:109#HisKA_3:786:0.0000533:855:70:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698165::NZ_RZUI01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span173455-176867Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO89_00535RefSeq proteinWP_150380465.1
Context group ID
GCF_008698165::NZ_RZUI01000001.1::G00005Context members
EMO89_RS00535EMO89_RS00540
Partner locus tags
EMO89_RS00535EMO89_RS00540
Partner old locus tags
EMO89_00535EMO89_00540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150380465.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9ZX03Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9ZX03_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO89_RS00535Primary locus identifier stored in the genes table.
Old locus tagEMO89_00535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUI01000001.1Sequence record reported by the local genomic context database.
Genomic interval173 455-176 103 nt2 649 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span173 455-176 867 ntGCF_008698165::NZ_RZUI01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698165::NZ_RZUI01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span173 455-176 867 nt3 413 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
173 455 nt176 867 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO89_RS00535GCF_008698165#EMO89_RS00535
HKClassicCurrent focus
173 455-176 103 nt · Forward (+)
EMO89_RS00540GCF_008698165#EMO89_RS00540
RRNarL
176 136-176 867 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698165#EMO89_RS00535The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0443792
Simplified PFAM architecture for HKOC_0443792
PFAM domain coverage: 411 / 882 aa (46.6%)
1 aa882 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[24-136] | HisKA_3[237-297] | HATPase_c[369-459] | DUF7134[562-707]
- Domain count: 4
- Matched identifier: HKOC_0443792
- Positioned domains: DUF7134 24-136 ; HisKA_3 237-297 ; HATPase_c 369-459 ; DUF7134 562-707
Cluster members and taxonomy
Representative gene: GCF_008698165#EMO89_RS00535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 162 · GCF_008698165
AssemblyASM869816v1 · Contighaploid
Genome composition3 032 244 bp · 61,0% GCBifidobacterium tissieri
Signal transduction countsGenes 32 · HK 11 · RR 17CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key