1 Response_reg#1
23-127 aa · 105 aa · 45.1% of protein
Raw token
Response_reg:23:0.00000000000000316:127:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO89_RS03135
Response regulator NarL family
Bifidobacterium tissieri · GCF_008698165
ClassRRTypeNarLLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008698165#EMO89_RS03135Stable P2CS identifier used across views.
GenomeGCF_008698165Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 233 aa (66.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
171-219 aa · 49 aa · 21.0% of protein
Raw token
HTH_LUXR:171:0.00000000000000312:219:49:58- Raw architecture: Response_reg:23:0.00000000000000316:127:105:111#HTH_LUXR:171:0.00000000000000312:219:49:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008698165::NZ_RZUI01000003.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span44882-45583Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO89_03135RefSeq proteinWP_150380917.1
Context group ID
GCF_008698165::NZ_RZUI01000003.1::G00008Context members
EMO89_RS03135
Partner locus tags
EMO89_RS03135
Partner old locus tags
EMO89_03135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150380917.1Primary protein accession used for annex mappings.
UniProt accessionA0A5N0A098Primary UniProt accession resolved in the annex database.
UniProt IDA0A5N0A098_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO89_RS03135Primary locus identifier stored in the genes table.
Old locus tagEMO89_03135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUI01000003.1Sequence record reported by the local genomic context database.
Genomic interval44 882-45 583 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 882-45 583 ntGCF_008698165::NZ_RZUI01000003.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698165::NZ_RZUI01000003.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUI01000003.1All displayed genes belong to this local TCS context.
Neighborhood span44 882-45 583 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 882 nt45 583 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EMO89_RS03135GCF_008698165#EMO89_RS03135
RRNarLCurrent focus
44 882-45 583 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698165#EMO89_RS03135The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1093528
Simplified PFAM architecture for RROC_1093528
PFAM domain coverage: 157 / 233 aa (67.4%)
1 aa233 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[23-128] | GerE[172-222]
- Domain count: 2
- Matched identifier: RROC_1093528
- Positioned domains: Response_reg 23-128 ; Response_reg 23-128 ; GerE 172-222 ; GerE 172-222
Cluster members and taxonomy
Representative gene: GCF_008698165#EMO89_RS03135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 162 · GCF_008698165
AssemblyASM869816v1 · Contighaploid
Genome composition3 032 244 bp · 61,0% GCBifidobacterium tissieri
Signal transduction countsGenes 32 · HK 11 · RR 17CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key