1 Response_reg#1
18-135 aa · 118 aa · 48.6% of protein
Raw token
Response_reg:18:1.12e-29:135:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO89_RS00540
Response regulator NarL family
Bifidobacterium tissieri · GCF_008698165
ClassRRTypeNarLLength243 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698165#EMO89_RS00540Stable P2CS identifier used across views.
GenomeGCF_008698165Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 243 aa (72.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
180-237 aa · 58 aa · 23.9% of protein
Raw token
HTH_LUXR:180:6.09e-23:237:58:58- Raw architecture: Response_reg:18:1.12e-29:135:118:111#HTH_LUXR:180:6.09e-23:237:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698165::NZ_RZUI01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span173455-176867Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO89_00540RefSeq proteinWP_150380587.1
Context group ID
GCF_008698165::NZ_RZUI01000001.1::G00005Context members
EMO89_RS00535EMO89_RS00540
Partner locus tags
EMO89_RS00535EMO89_RS00540
Partner old locus tags
EMO89_00535EMO89_00540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150380587.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9ZX50Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9ZX50_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO89_RS00540Primary locus identifier stored in the genes table.
Old locus tagEMO89_00540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUI01000001.1Sequence record reported by the local genomic context database.
Genomic interval176 136-176 867 nt732 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span173 455-176 867 ntGCF_008698165::NZ_RZUI01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698165::NZ_RZUI01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span173 455-176 867 nt3 413 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
173 455 nt176 867 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO89_RS00535GCF_008698165#EMO89_RS00535
HKClassic
173 455-176 103 nt · Forward (+)
EMO89_RS00540GCF_008698165#EMO89_RS00540
RRNarLCurrent focus
176 136-176 867 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698165#EMO89_RS00540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0831032
Simplified PFAM architecture for RROC_0831032
PFAM domain coverage: 173 / 243 aa (71.2%)
1 aa243 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[18-134] | GerE[182-237]
- Domain count: 2
- Matched identifier: RROC_0831032
- Positioned domains: Response_reg 18-134 ; Response_reg 18-134 ; GerE 182-237 ; GerE 182-237
Cluster members and taxonomy
Representative gene: GCF_008698165#EMO89_RS00540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 162 · GCF_008698165
AssemblyASM869816v1 · Contighaploid
Genome composition3 032 244 bp · 61,0% GCBifidobacterium tissieri
Signal transduction countsGenes 32 · HK 11 · RR 17CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key