1 His_kinase#1
393-465 aa · 73 aa · 12.5% of protein
Raw token
His_kinase:393:2.12e-20:465:74:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS15460
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_008632235
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008632235#F2P57_RS15460Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 586 aa (28.8%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
485-580 aa · 96 aa · 16.4% of protein
Raw token
HATPase_c:485:0.0000000000813:580:105:109- Raw architecture: His_kinase:393:2.12e-20:465:74:80#HATPase_c:485:0.0000000000813:580:105:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008632235::NZ_VWSY01000002.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25930-28486Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_15460RefSeq proteinWP_173871516.1
Context group ID
GCF_008632235::NZ_VWSY01000002.1::G00052Context members
F2P57_RS15460F2P57_RS15465
Partner locus tags
F2P57_RS15460F2P57_RS15465
Partner old locus tags
F2P57_15460F2P57_15465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173871516.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2ZBP4Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2ZBP4_CLOSYDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS15460Primary locus identifier stored in the genes table.
Old locus tagF2P57_15460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000002.1Sequence record reported by the local genomic context database.
Genomic interval25 930-27 690 nt1 761 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 930-28 486 ntGCF_008632235::NZ_VWSY01000002.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000002.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000002.1All displayed genes belong to this local TCS context.
Neighborhood span25 930-28 486 nt2 557 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 930 nt28 486 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
F2P57_RS15460GCF_008632235#F2P57_RS15460
HKClassicCurrent focus
25 930-27 690 nt · Forward (+)
F2P57_RS15465GCF_008632235#F2P57_RS15465
RRunclassified
27 680-28 486 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS15460The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1132779
Simplified PFAM architecture for HKOC_1132779
PFAM domain coverage: 171 / 586 aa (29.2%)
1 aa586 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[391-465] | HATPase_c[485-580]
- Domain count: 2
- Matched identifier: HKOC_1132779
- Positioned domains: His_kinase 391-465 ; HATPase_c 485-580
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS15460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key