1 Response_reg#1
5-117 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:5:5.21e-26:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS13830
Response regulator OmpR family
[Clostridium] symbiosum · GCF_008632235
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008632235#F2P57_RS13830Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage191 / 228 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-224 aa · 78 aa · 34.2% of protein
Raw token
Trans_reg_C:147:5.51e-31:224:78:77- Raw architecture: Response_reg:5:5.21e-26:117:114:111#Trans_reg_C:147:5.51e-31:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008632235::NZ_VWSY01000001.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2986076-2987808Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_13830RefSeq proteinWP_150028008.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00048Context members
F2P57_RS13825F2P57_RS13830
Partner locus tags
F2P57_RS13825F2P57_RS13830
Partner old locus tags
F2P57_13825F2P57_13830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150028008.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6AMX6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6AMX6_CLOSYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS13830Primary locus identifier stored in the genes table.
Old locus tagF2P57_13830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval2 987 122-2 987 808 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 986 076-2 987 808 ntGCF_008632235::NZ_VWSY01000001.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 986 076-2 987 808 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 986 076 nt2 987 808 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
F2P57_RS13825GCF_008632235#F2P57_RS13825
HKClassic
2 986 076-2 987 113 nt · Reverse (-)
F2P57_RS13830GCF_008632235#F2P57_RS13830
RROmpRCurrent focus
2 987 122-2 987 808 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS13830The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1318916
Simplified PFAM architecture for RROC_1318916
PFAM domain coverage: 180 / 228 aa (78.9%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-108] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1318916
- Positioned domains: Response_reg 5-108 ; Response_reg 5-108 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS13830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key