1 Response_reg#1
5-119 aa · 115 aa · 47.7% of protein
Raw token
Response_reg:5:1.32e-22:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS12985
Response regulator LytTR family
[Clostridium] symbiosum · GCF_008632235
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008632235#F2P57_RS12985Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 241 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-229 aa · 88 aa · 36.5% of protein
Raw token
LytTR:142:0.00000000000000351:229:94:98- Raw architecture: Response_reg:5:1.32e-22:119:117:111#LytTR:142:0.00000000000000351:229:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008632235::NZ_VWSY01000001.1::G00046
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2804623-2805348Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_12985RefSeq proteinWP_009295672.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00046Context members
F2P57_RS12985
Partner locus tags
F2P57_RS12985
Partner old locus tags
F2P57_12985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009295672.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5F615Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5F615_CLOSYDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS12985Primary locus identifier stored in the genes table.
Old locus tagF2P57_12985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval2 804 623-2 805 348 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 804 623-2 805 348 ntGCF_008632235::NZ_VWSY01000001.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 804 623-2 805 348 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 804 623 nt2 805 348 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
F2P57_RS12985GCF_008632235#F2P57_RS12985
RRLytTRCurrent focus
2 804 623-2 805 348 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS12985The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0869270
Simplified PFAM architecture for RROC_0869270
PFAM domain coverage: 200 / 241 aa (83.0%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-118] | LytTR[143-228]
- Domain count: 2
- Matched identifier: RROC_0869270
- Positioned domains: Response_reg 5-118 ; Response_reg 5-118 ; LytTR 143-228 ; LytTR 143-228
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS12985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key