1 HAMP#1
100-166 aa · 67 aa · 16.1% of protein
Raw token
HAMP:100:0.0000000000105:166:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS00805
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_008632235
ClassHKTypeClassicLength416 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008632235#F2P57_RS00805Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length416 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 416 aa (58.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa416 aa
Domain-by-domain annotation3 items
2 HisKA#2
191-256 aa · 66 aa · 15.9% of protein
Raw token
HisKA:191:0.000000179:256:66:643 HATPase_c#3
302-413 aa · 112 aa · 26.9% of protein
Raw token
HATPase_c:302:7.82e-24:413:113:109- Raw architecture: HAMP:100:0.0000000000105:166:67:69#HisKA:191:0.000000179:256:66:64#HATPase_c:302:7.82e-24:413:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008632235::NZ_VWSY01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span187723-189655Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_00805RefSeq proteinWP_243133658.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00007Context members
F2P57_RS00805F2P57_RS00810
Partner locus tags
F2P57_RS00805F2P57_RS00810
Partner old locus tags
F2P57_00805F2P57_00810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243133658.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS00805Primary locus identifier stored in the genes table.
Old locus tagF2P57_00805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval187 723-188 973 nt1 251 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span187 723-189 655 ntGCF_008632235::NZ_VWSY01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span187 723-189 655 nt1 933 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
187 723 nt189 655 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
F2P57_RS00805GCF_008632235#F2P57_RS00805
HKClassicCurrent focus
187 723-188 973 nt · Reverse (-)
F2P57_RS00810GCF_008632235#F2P57_RS00810
RROmpR
188 963-189 655 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS00805The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2304423
Simplified PFAM architecture for HKOC_2304423
PFAM domain coverage: 226 / 416 aa (54.3%)
1 aa416 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[114-165] | HisKA[193-256] | HATPase_c[303-412]
- Domain count: 3
- Matched identifier: HKOC_2304423
- Positioned domains: HAMP 114-165 ; HisKA 193-256 ; HATPase_c 303-412
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS00805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key