1 sCache_2#1
176-288 aa · 113 aa · 15.5% of protein
Raw token
sCache_2:176:0.000000000187:288:115:152P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS00620
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_008632235
ClassHKTypeHybridLength728 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008632235#F2P57_RS00620Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
sCache_2HisKAHATPase_cResponse_reg
Protein length728 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage410 / 728 aa (56.3%)Merged over positioned domains only.
Domain description1 sCache_2,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa728 aa
Domain-by-domain annotation4 items
2 HisKA#2
356-417 aa · 62 aa · 8.5% of protein
Raw token
HisKA:356:0.000000122:417:62:643 HATPase_c#3
463-587 aa · 125 aa · 17.2% of protein
Raw token
HATPase_c:463:5.98e-26:587:126:1094 Response_reg#4
613-722 aa · 110 aa · 15.1% of protein
Raw token
Response_reg:613:0.0000000000000361:722:114:111- Raw architecture: sCache_2:176:0.000000000187:288:115:152#HisKA:356:0.000000122:417:62:64#HATPase_c:463:5.98e-26:587:126:109#Response_reg:613:0.0000000000000361:722:114:111
- Domain description: 1 sCache_2,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008632235::NZ_VWSY01000001.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span140033-142219Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_00620RefSeq proteinWP_150026684.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00003Context members
F2P57_RS00620
Partner locus tags
F2P57_RS00620
Partner old locus tags
F2P57_00620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_150026684.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS00620Primary locus identifier stored in the genes table.
Old locus tagF2P57_00620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval140 033-142 219 nt2 187 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span140 033-142 219 ntGCF_008632235::NZ_VWSY01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span140 033-142 219 nt2 187 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 033 nt142 219 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
F2P57_RS00620GCF_008632235#F2P57_RS00620
HKHybridCurrent focus
140 033-142 219 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028207305#PMZ67_RS17820Use this link to inspect the representative gene detail.
PFAM architecturesCache_2 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0645124
Simplified PFAM architecture for HKOC_0645124
PFAM domain coverage: 416 / 760 aa (54.7%)
1 aa760 aa
sCache_2HisKAHATPase_cResponse_reg
- Simplified architecture: sCache_2 + HisKA + HATPase_c + Response_reg
- Raw architecture: sCache_2[201-317] | HisKA[389-451] | HATPase_c[495-620] | Response_reg[645-754]
- Domain count: 4
- Matched identifier: HKOC_0645124
- Positioned domains: sCache_2 201-317 ; HisKA 389-451 ; HATPase_c 495-620 ; Response_reg 645-754
Cluster members and taxonomy
Representative gene: GCF_028207305#PMZ67_RS17820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key