1 Response_reg#1
4-117 aa · 114 aa · 21.6% of protein
Raw token
Response_reg:4:5.01e-31:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS00390
Response regulator, unclassified
[Clostridium] symbiosum · GCF_008632235
ClassRRTypeunclassifiedLength529 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008632235#F2P57_RS00390Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 529 aa (36.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa529 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
437-476 aa · 40 aa · 7.6% of protein
Raw token
HTH_AraC:437:0.0000000000494:476:40:423 HTH_AraC#3
490-526 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:490:0.00000118:526:37:42- Raw architecture: Response_reg:4:5.01e-31:117:114:111#HTH_AraC:437:0.0000000000494:476:40:42#HTH_AraC:490:0.00000118:526:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008632235::NZ_VWSY01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87419-90096Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_00390RefSeq proteinWP_003504608.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00002Context members
F2P57_RS00385F2P57_RS00390
Partner locus tags
F2P57_RS00385F2P57_RS00390
Partner old locus tags
F2P57_00385F2P57_00390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003504608.1Primary protein accession used for annex mappings.
UniProt accessionE7GTL9Primary UniProt accession resolved in the annex database.
UniProt IDE7GTL9_CLOS6Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS00390Primary locus identifier stored in the genes table.
Old locus tagF2P57_00390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval88 507-90 096 nt1 590 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 419-90 096 ntGCF_008632235::NZ_VWSY01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span87 419-90 096 nt2 678 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 419 nt90 096 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
F2P57_RS00385GCF_008632235#F2P57_RS00385
HKClassic
87 419-88 468 nt · Reverse (-)
F2P57_RS00390GCF_008632235#F2P57_RS00390
RRunclassifiedCurrent focus
88 507-90 096 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS21965Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0112754
Simplified PFAM architecture for RROC_0112754
PFAM domain coverage: 191 / 529 aa (36.1%)
1 aa529 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[449-526]
- Domain count: 2
- Matched identifier: RROC_0112754
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 449-526 ; HTH_18 449-526
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS21965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key