1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:6.43e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DN394_RS13235
Response regulator OmpR family
Bacillus sp. BB081 · GCF_008368895
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008368895#DN394_RS13235Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 229 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-225 aa · 74 aa · 32.3% of protein
Raw token
Trans_reg_C:152:1.58e-28:225:77:77- Raw architecture: Response_reg:5:6.43e-36:114:111:111#Trans_reg_C:152:1.58e-28:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008368895::NZ_QOZX01000024.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62921-65460Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN394_13260RefSeq proteinWP_097918238.1
Context group ID
GCF_008368895::NZ_QOZX01000024.1::G00028Context members
DN394_RS13235DN394_RS13240
Partner locus tags
DN394_RS13235DN394_RS13240
Partner old locus tags
DN394_13260DN394_13265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097918238.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDN394_RS13235Primary locus identifier stored in the genes table.
Old locus tagDN394_13260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QOZX01000024.1Sequence record reported by the local genomic context database.
Genomic interval62 921-63 610 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span62 921-65 460 ntGCF_008368895::NZ_QOZX01000024.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008368895::NZ_QOZX01000024.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QOZX01000024.1All displayed genes belong to this local TCS context.
Neighborhood span62 921-65 460 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 921 nt65 460 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DN394_RS13235GCF_008368895#DN394_RS13235
RROmpRCurrent focus
62 921-63 610 nt · Forward (+)
DN394_RS13240GCF_008368895#DN394_RS13240
HKClassic
63 607-65 460 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002551545#CON92_RS25075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1258026
Simplified PFAM architecture for RROC_1258026
PFAM domain coverage: 182 / 229 aa (79.5%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1258026
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_002551545#CON92_RS25075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 217 820 · GCF_008368895
AssemblyASM836889v1 · Scaffoldhaploid
Genome composition5 442 865 bp · 35,0% GCBacillus sp. BB081
Signal transduction countsGenes 122 · HK 64 · RR 57CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key