1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:6.65e-33:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DN394_RS00400
Response regulator OmpR family
Bacillus sp. BB081 · GCF_008368895
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008368895#DN394_RS00400Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-227 aa · 76 aa · 33.0% of protein
Raw token
Trans_reg_C:152:5.21e-36:227:76:77- Raw architecture: Response_reg:5:6.65e-33:114:111:111#Trans_reg_C:152:5.21e-36:227:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008368895::NZ_QOZX01000002.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59721-61350Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN394_00400RefSeq proteinWP_000018041.1
Context group ID
GCF_008368895::NZ_QOZX01000002.1::G00021Context members
DN394_RS00400DN394_RS00405
Partner locus tags
DN394_RS00400DN394_RS00405
Partner old locus tags
DN394_00400DN394_00405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000018041.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD6TIH8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD6TIH8_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDN394_RS00400Primary locus identifier stored in the genes table.
Old locus tagDN394_00400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QOZX01000002.1Sequence record reported by the local genomic context database.
Genomic interval59 721-60 413 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 721-61 350 ntGCF_008368895::NZ_QOZX01000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008368895::NZ_QOZX01000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QOZX01000002.1All displayed genes belong to this local TCS context.
Neighborhood span59 721-61 350 nt1 630 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 721 nt61 350 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DN394_RS00400GCF_008368895#DN394_RS00400
RROmpRCurrent focus
59 721-60 413 nt · Forward (+)
DN394_RS00405GCF_008368895#DN394_RS00405
HKClassic
60 415-61 350 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160955#BCERE0006_RS22350Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200242
Simplified PFAM architecture for RROC_1200242
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1200242
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_000160955#BCERE0006_RS22350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 217 820 · GCF_008368895
AssemblyASM836889v1 · Scaffoldhaploid
Genome composition5 442 865 bp · 35,0% GCBacillus sp. BB081
Signal transduction countsGenes 122 · HK 64 · RR 57CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key