1 HAMP#1
50-119 aa · 70 aa · 19.7% of protein
Raw token
HAMP:50:0.00000000000038:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DN394_RS12780
Histidine kinase, Classic
Bacillus sp. BB081 · GCF_008368895
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008368895#DN394_RS12780Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 355 aa (67.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-191 aa · 62 aa · 17.5% of protein
Raw token
HisKA:130:0.000000000000368:191:62:643 HATPase_c#3
243-350 aa · 108 aa · 30.4% of protein
Raw token
HATPase_c:243:1.2e-21:350:109:109- Raw architecture: HAMP:50:0.00000000000038:119:70:69#HisKA:130:0.000000000000368:191:62:64#HATPase_c:243:1.2e-21:350:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008368895::NZ_QOZX01000023.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46842-48597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN394_12800RefSeq proteinWP_141520993.1
Context group ID
GCF_008368895::NZ_QOZX01000023.1::G00025Context members
DN394_RS12780DN394_RS12785
Partner locus tags
DN394_RS12780DN394_RS12785
Partner old locus tags
DN394_12800DN394_12805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_141520993.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDN394_RS12780Primary locus identifier stored in the genes table.
Old locus tagDN394_12800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QOZX01000023.1Sequence record reported by the local genomic context database.
Genomic interval46 842-47 909 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 842-48 597 ntGCF_008368895::NZ_QOZX01000023.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008368895::NZ_QOZX01000023.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QOZX01000023.1All displayed genes belong to this local TCS context.
Neighborhood span46 842-48 597 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 842 nt48 597 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DN394_RS12780GCF_008368895#DN394_RS12780
HKClassicCurrent focus
46 842-47 909 nt · Reverse (-)
DN394_RS12785GCF_008368895#DN394_RS12785
RROmpR
47 899-48 597 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555855#CN905_RS07130Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2775888
Simplified PFAM architecture for HKOC_2775888
PFAM domain coverage: 223 / 355 aa (62.8%)
1 aa355 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[67-119] | HisKA[130-192] | HATPase_c[245-351]
- Domain count: 3
- Matched identifier: HKOC_2775888
- Positioned domains: HAMP 67-119 ; HisKA 130-192 ; HATPase_c 245-351
Cluster members and taxonomy
Representative gene: GCF_002555855#CN905_RS07130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 217 820 · GCF_008368895
AssemblyASM836889v1 · Scaffoldhaploid
Genome composition5 442 865 bp · 35,0% GCBacillus sp. BB081
Signal transduction countsGenes 122 · HK 64 · RR 57CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key