1 HAMP#1
172-235 aa · 64 aa · 13.4% of protein
Raw token
HAMP:172:0.00000000000434:235:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DN394_RS09000
Histidine kinase, Classic
Bacillus sp. BB081 · GCF_008368895
ClassHKTypeClassicLength477 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008368895#DN394_RS09000Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length477 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 477 aa (50.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa477 aa
Domain-by-domain annotation3 items
2 HisKA#2
248-314 aa · 67 aa · 14.0% of protein
Raw token
HisKA:248:0.00000000000045:314:67:643 HATPase_c#3
364-473 aa · 110 aa · 23.1% of protein
Raw token
HATPase_c:364:1.31e-25:473:110:109- Raw architecture: HAMP:172:0.00000000000434:235:64:69#HisKA:248:0.00000000000045:314:67:64#HATPase_c:364:1.31e-25:473:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008368895::NZ_QOZX01000016.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span209394-211516Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN394_09005RefSeq proteinWP_098091892.1
Context group ID
GCF_008368895::NZ_QOZX01000016.1::G00012Context members
DN394_RS08995DN394_RS09000
Partner locus tags
DN394_RS08995DN394_RS09000
Partner old locus tags
DN394_09000DN394_09005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098091892.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDN394_RS09000Primary locus identifier stored in the genes table.
Old locus tagDN394_09005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QOZX01000016.1Sequence record reported by the local genomic context database.
Genomic interval210 083-211 516 nt1 434 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span209 394-211 516 ntGCF_008368895::NZ_QOZX01000016.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008368895::NZ_QOZX01000016.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QOZX01000016.1All displayed genes belong to this local TCS context.
Neighborhood span209 394-211 516 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
209 394 nt211 516 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DN394_RS08995GCF_008368895#DN394_RS08995
RROmpR
209 394-210 083 nt · Forward (+)
DN394_RS09000GCF_008368895#DN394_RS09000
HKClassicCurrent focus
210 083-211 516 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555085#CN607_RS00055Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1647216
Simplified PFAM architecture for HKOC_1647216
PFAM domain coverage: 225 / 477 aa (47.2%)
1 aa477 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-235] | HisKA[249-312] | HATPase_c[364-474]
- Domain count: 3
- Matched identifier: HKOC_1647216
- Positioned domains: HAMP 186-235 ; HisKA 249-312 ; HATPase_c 364-474
Cluster members and taxonomy
Representative gene: GCF_002555085#CN607_RS00055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 217 820 · GCF_008368895
AssemblyASM836889v1 · Scaffoldhaploid
Genome composition5 442 865 bp · 35,0% GCBacillus sp. BB081
Signal transduction countsGenes 122 · HK 64 · RR 57CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key