1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:6.09e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FXV78_RS03555
Response regulator OmpR family
Mediterraneibacter gnavus ATCC 29149 · GCF_008121495
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008121495#FXV78_RS03555Stable P2CS identifier used across views.
GenomeGCF_008121495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 237 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:154:2.65e-26:229:76:77- Raw architecture: Response_reg:6:6.09e-34:115:111:111#Trans_reg_C:154:2.65e-26:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008121495::NZ_CP043051.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span713687-715463Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFXV78_03555RefSeq proteinWP_004842397.1
Context group ID
GCF_008121495::NZ_CP043051.1::G00007Context members
FXV78_RS03550FXV78_RS03555
Partner locus tags
FXV78_RS03550FXV78_RS03555
Partner old locus tags
FXV78_03550FXV78_03555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004842397.1Primary protein accession used for annex mappings.
UniProt accessionA7B1Z5Primary UniProt accession resolved in the annex database.
UniProt IDA7B1Z5_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFXV78_RS03555Primary locus identifier stored in the genes table.
Old locus tagFXV78_03555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP043051.1Sequence record reported by the local genomic context database.
Genomic interval714 750-715 463 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span713 687-715 463 ntGCF_008121495::NZ_CP043051.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008121495::NZ_CP043051.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP043051.1All displayed genes belong to this local TCS context.
Neighborhood span713 687-715 463 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
713 687 nt715 463 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FXV78_RS03550GCF_008121495#FXV78_RS03550
HKClassic
713 687-714 757 nt · Forward (+)
FXV78_RS03555GCF_008121495#FXV78_RS03555
RROmpRCurrent focus
714 750-715 463 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS06900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961724
Simplified PFAM architecture for RROC_0961724
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0961724
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS06900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_008121495
AssemblyASM812149v1 · Complete Genomehaploid
Genome composition3 552 639 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key