1 HAMP#1
150-221 aa · 72 aa · 15.8% of protein
Raw token
HAMP:150:0.00000087:221:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FXV78_RS01590
Histidine kinase, Classic
Mediterraneibacter gnavus ATCC 29149 · GCF_008121495
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008121495#FXV78_RS01590Stable P2CS identifier used across views.
GenomeGCF_008121495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 456 aa (52.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-291 aa · 60 aa · 13.2% of protein
Raw token
HisKA:232:0.000000182:291:60:643 HATPase_c#3
343-450 aa · 108 aa · 23.7% of protein
Raw token
HATPase_c:343:4.82e-17:450:108:109- Raw architecture: HAMP:150:0.00000087:221:72:69#HisKA:232:0.000000182:291:60:64#HATPase_c:343:4.82e-17:450:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008121495::NZ_CP043051.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span338163-340183Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFXV78_01590RefSeq proteinWP_004841909.1
Context group ID
GCF_008121495::NZ_CP043051.1::G00004Context members
FXV78_RS01590FXV78_RS01595
Partner locus tags
FXV78_RS01590FXV78_RS01595
Partner old locus tags
FXV78_01590FXV78_01595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004841909.1Primary protein accession used for annex mappings.
UniProt accessionA7B124Primary UniProt accession resolved in the annex database.
UniProt IDA7B124_MEDG7Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFXV78_RS01590Primary locus identifier stored in the genes table.
Old locus tagFXV78_01590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP043051.1Sequence record reported by the local genomic context database.
Genomic interval338 163-339 533 nt1 371 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span338 163-340 183 ntGCF_008121495::NZ_CP043051.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008121495::NZ_CP043051.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP043051.1All displayed genes belong to this local TCS context.
Neighborhood span338 163-340 183 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
338 163 nt340 183 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FXV78_RS01590GCF_008121495#FXV78_RS01590
HKClassicCurrent focus
338 163-339 533 nt · Reverse (-)
FXV78_RS01595GCF_008121495#FXV78_RS01595
RROmpR
339 524-340 183 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS05500Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1887735
Simplified PFAM architecture for HKOC_1887735
PFAM domain coverage: 161 / 456 aa (35.3%)
1 aa456 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-285] | HATPase_c[344-451]
- Domain count: 2
- Matched identifier: HKOC_1887735
- Positioned domains: HisKA 233-285 ; HATPase_c 344-451
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS05500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_008121495
AssemblyASM812149v1 · Complete Genomehaploid
Genome composition3 552 639 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key