1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:6.09e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMGNA_RS06900
Response regulator OmpR family
Mediterraneibacter gnavus ATCC 29149 · GCF_000169475
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000169475#RUMGNA_RS06900Stable P2CS identifier used across views.
GenomeGCF_000169475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 237 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:154:2.65e-26:229:76:77- Raw architecture: Response_reg:6:6.09e-34:115:111:111#Trans_reg_C:154:2.65e-26:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000169475::NZ_AAYG02000011.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span297354-299130Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMGNA_01571RefSeq proteinWP_004842397.1
Context group ID
GCF_000169475::NZ_AAYG02000011.1::G00035Context members
RUMGNA_RS06900RUMGNA_RS06905
Partner locus tags
RUMGNA_RS06900RUMGNA_RS06905
Partner old locus tags
RUMGNA_01571RUMGNA_01572
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004842397.1Primary protein accession used for annex mappings.
UniProt accessionA7B1Z5Primary UniProt accession resolved in the annex database.
UniProt IDA7B1Z5_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMGNA_RS06900Primary locus identifier stored in the genes table.
Old locus tagRUMGNA_01571Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAYG02000011.1Sequence record reported by the local genomic context database.
Genomic interval297 354-298 067 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span297 354-299 130 ntGCF_000169475::NZ_AAYG02000011.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169475::NZ_AAYG02000011.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAYG02000011.1All displayed genes belong to this local TCS context.
Neighborhood span297 354-299 130 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
297 354 nt299 130 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMGNA_RS06900GCF_000169475#RUMGNA_RS06900
RROmpRCurrent focus
297 354-298 067 nt · Reverse (-)
RUMGNA_RS06905GCF_000169475#RUMGNA_RS06905
HKClassic
298 060-299 130 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS06900The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961724
Simplified PFAM architecture for RROC_0961724
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0961724
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS06900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_000169475
AssemblyASM16947v1 · Contighaploid
Genome composition3 501 911 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 81 · HK 39 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key