1 HAMP#1
195-266 aa · 72 aa · 14.1% of protein
Raw token
HAMP:195:0.00000000000657:266:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FKY81_RS06920
Histidine kinase, Classic
Enterococcus faecalis · GCF_006541705
ClassHKTypeClassicLength509 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006541705#FKY81_RS06920Stable P2CS identifier used across views.
GenomeGCF_006541705Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 509 aa (49.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-336 aa · 67 aa · 13.2% of protein
Raw token
HisKA:270:0.00000000000000823:336:67:643 HATPase_c#3
384-494 aa · 111 aa · 21.8% of protein
Raw token
HATPase_c:384:7.69e-30:494:111:109- Raw architecture: HAMP:195:0.00000000000657:266:72:69#HisKA:270:0.00000000000000823:336:67:64#HATPase_c:384:7.69e-30:494:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006541705::NZ_VHRF01000012.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span729-2955Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFKY81_06920RefSeq proteinWP_104855352.1
Context group ID
GCF_006541705::NZ_VHRF01000012.1::G00003Context members
FKY81_RS06920FKY81_RS06925
Partner locus tags
FKY81_RS06920FKY81_RS06925
Partner old locus tags
FKY81_06920FKY81_06925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_104855352.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFKY81_RS06920Primary locus identifier stored in the genes table.
Old locus tagFKY81_06920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VHRF01000012.1Sequence record reported by the local genomic context database.
Genomic interval729-2 258 nt1 530 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span729-2 955 ntGCF_006541705::NZ_VHRF01000012.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006541705::NZ_VHRF01000012.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VHRF01000012.1All displayed genes belong to this local TCS context.
Neighborhood span729-2 955 nt2 227 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
729 nt2 955 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FKY81_RS06920GCF_006541705#FKY81_RS06920
HKClassicCurrent focus
729-2 258 nt · Reverse (-)
FKY81_RS06925GCF_006541705#FKY81_RS06925
RROmpR
2 269-2 955 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002946755#CUS33_RS13775Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1433404
Simplified PFAM architecture for HKOC_1433404
PFAM domain coverage: 373 / 509 aa (73.3%)
1 aa509 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[45-189] | HAMP[213-265] | HisKA[271-336] | HATPase_c[385-493]
- Domain count: 4
- Matched identifier: HKOC_1433404
- Positioned domains: ArlS_N 45-189 ; HAMP 213-265 ; HisKA 271-336 ; HATPase_c 385-493
Cluster members and taxonomy
Representative gene: GCF_002946755#CUS33_RS13775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_006541705
AssemblyASM654170v1 · Contighaploid
Genome composition2 647 103 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 26 · HK 12 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key