1 Response_reg#1
4-113 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:4:1.19e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FKY81_RS00955
Response regulator OmpR family
Enterococcus faecalis · GCF_006541705
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006541705#FKY81_RS00955Stable P2CS identifier used across views.
GenomeGCF_006541705Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:152:1.48e-34:228:77:77- Raw architecture: Response_reg:4:1.19e-39:113:111:111#Trans_reg_C:152:1.48e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006541705::NZ_VHRF01000001.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span194719-197258Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFKY81_00955RefSeq proteinWP_141426479.1
Context group ID
GCF_006541705::NZ_VHRF01000001.1::G00009Context members
FKY81_RS00950FKY81_RS00955
Partner locus tags
FKY81_RS00950FKY81_RS00955
Partner old locus tags
FKY81_00950FKY81_00955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_141426479.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFKY81_RS00955Primary locus identifier stored in the genes table.
Old locus tagFKY81_00955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VHRF01000001.1Sequence record reported by the local genomic context database.
Genomic interval196 545-197 258 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span194 719-197 258 ntGCF_006541705::NZ_VHRF01000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006541705::NZ_VHRF01000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VHRF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span194 719-197 258 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
194 719 nt197 258 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FKY81_RS00950GCF_006541705#FKY81_RS00950
HKClassic
194 719-196 548 nt · Reverse (-)
FKY81_RS00955GCF_006541705#FKY81_RS00955
RROmpRCurrent focus
196 545-197 258 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006541705#FKY81_RS00955The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0970105
Simplified PFAM architecture for RROC_0970105
PFAM domain coverage: 187 / 237 aa (78.9%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_0970105
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_006541705#FKY81_RS00955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_006541705
AssemblyASM654170v1 · Contighaploid
Genome composition2 647 103 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 26 · HK 12 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key