1 Response_reg#1
8-109 aa · 102 aa · 37.8% of protein
Raw token
Response_reg:8:1.41e-18:109:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BG22_RS08505
Response regulator LytTR family
Bifidobacterium sp. UTBIF-78 · GCF_006408945
ClassRRTypeLytTRLength270 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_006408945#BG22_RS08505Stable P2CS identifier used across views.
GenomeGCF_006408945Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length270 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 270 aa (71.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa270 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 34.1% of protein
Raw token
LytTR:139:3.47e-19:230:97:98- Raw architecture: Response_reg:8:1.41e-18:109:105:111#LytTR:139:3.47e-19:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_006408945::NZ_JFAO01000037.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span15838-16650Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBG22_08505RefSeq proteinWP_140494802.1
Context group ID
GCF_006408945::NZ_JFAO01000037.1::G00022Context members
BG22_RS08505
Partner locus tags
BG22_RS08505
Partner old locus tags
BG22_08505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_140494802.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBG22_RS08505Primary locus identifier stored in the genes table.
Old locus tagBG22_08505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JFAO01000037.1Sequence record reported by the local genomic context database.
Genomic interval15 838-16 650 nt813 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 838-16 650 ntGCF_006408945::NZ_JFAO01000037.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006408945::NZ_JFAO01000037.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JFAO01000037.1All displayed genes belong to this local TCS context.
Neighborhood span15 838-16 650 nt813 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 838 nt16 650 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BG22_RS08505GCF_006408945#BG22_RS08505
RRLytTRCurrent focus
15 838-16 650 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006408945#BG22_RS08505The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0615181
Simplified PFAM architecture for RROC_0615181
PFAM domain coverage: 193 / 270 aa (71.5%)
1 aa270 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-110] | LytTR[142-230]
- Domain count: 2
- Matched identifier: RROC_0615181
- Positioned domains: Response_reg 7-110 ; Response_reg 7-110 ; LytTR 142-230 ; LytTR 142-230
Cluster members and taxonomy
Representative gene: GCF_006408945#BG22_RS08505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 465 263 · GCF_006408945
AssemblyASM640894v1 · Contighaploid
Genome composition2 807 412 bp · 62,5% GCBifidobacterium sp. UTBIF-78
Signal transduction countsGenes 40 · HK 14 · RR 23CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key