1 KdpD#1
4-213 aa · 210 aa · 20.8% of protein
Raw token
KdpD:4:1.12e-126:213:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BG22_RS01085
Histidine kinase, Classic
Bifidobacterium sp. UTBIF-78 · GCF_006408945
ClassHKTypeClassicLength1010 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006408945#BG22_RS01085Stable P2CS identifier used across views.
GenomeGCF_006408945Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length1010 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage388 / 1010 aa (38.4%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1010 aa
Domain-by-domain annotation3 items
2 HisKA#2
622-689 aa · 68 aa · 6.7% of protein
Raw token
HisKA:622:0.000000000108:689:68:643 HATPase_c#3
731-840 aa · 110 aa · 10.9% of protein
Raw token
HATPase_c:731:1.44e-23:840:110:109- Raw architecture: KdpD:4:1.12e-126:213:210:210#HisKA:622:0.000000000108:689:68:64#HATPase_c:731:1.44e-23:840:110:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006408945::NZ_JFAO01000003.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span137072-140832Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBG22_01095RefSeq proteinWP_140492321.1
Context group ID
GCF_006408945::NZ_JFAO01000003.1::G00005Context members
BG22_RS01085BG22_RS01090
Partner locus tags
BG22_RS01085BG22_RS01090
Partner old locus tags
BG22_01095BG22_01100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_140492321.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBG22_RS01085Primary locus identifier stored in the genes table.
Old locus tagBG22_01095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JFAO01000003.1Sequence record reported by the local genomic context database.
Genomic interval137 072-140 104 nt3 033 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span137 072-140 832 ntGCF_006408945::NZ_JFAO01000003.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006408945::NZ_JFAO01000003.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JFAO01000003.1All displayed genes belong to this local TCS context.
Neighborhood span137 072-140 832 nt3 761 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
137 072 nt140 832 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BG22_RS01085GCF_006408945#BG22_RS01085
HKClassicCurrent focus
137 072-140 104 nt · Forward (+)
BG22_RS01090GCF_006408945#BG22_RS01090
RROmpR
140 119-140 832 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006408945#BG22_RS01085The current gene is the representative for this cluster.
PFAM architectureKdpD + Usp + DUF4118 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0283827
Simplified PFAM architecture for HKOC_0283827
PFAM domain coverage: 605 / 1010 aa (59.9%)
1 aa1010 aa
KdpDUspDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + Usp + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[5-213] | Usp[234-349] | DUF4118[386-490] | HisKA[623-689] | HATPase_c[732-839]
- Domain count: 5
- Matched identifier: HKOC_0283827
- Positioned domains: KdpD 5-213 ; Usp 234-349 ; DUF4118 386-490 ; HisKA 623-689 ; HATPase_c 732-839
Cluster members and taxonomy
Representative gene: GCF_006408945#BG22_RS01085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 465 263 · GCF_006408945
AssemblyASM640894v1 · Contighaploid
Genome composition2 807 412 bp · 62,5% GCBifidobacterium sp. UTBIF-78
Signal transduction countsGenes 40 · HK 14 · RR 23CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key