1 Response_reg#1
3-106 aa · 104 aa · 40.2% of protein
Raw token
Response_reg:3:4.09e-23:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BG22_RS00530
Response regulator NarL family
Bifidobacterium sp. UTBIF-78 · GCF_006408945
ClassRRTypeNarLLength259 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006408945#BG22_RS00530Stable P2CS identifier used across views.
GenomeGCF_006408945Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length259 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 259 aa (61.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa259 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
198-253 aa · 56 aa · 21.6% of protein
Raw token
HTH_LUXR:198:2.83e-19:253:56:58- Raw architecture: Response_reg:3:4.09e-23:106:104:111#HTH_LUXR:198:2.83e-19:253:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006408945::NZ_JFAO01000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span133511-135789Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBG22_00525RefSeq proteinWP_140492092.1
Context group ID
GCF_006408945::NZ_JFAO01000002.1::G00004Context members
BG22_RS00530BG22_RS00535
Partner locus tags
BG22_RS00530BG22_RS00535
Partner old locus tags
BG22_00525BG22_00530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_140492092.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBG22_RS00530Primary locus identifier stored in the genes table.
Old locus tagBG22_00525Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JFAO01000002.1Sequence record reported by the local genomic context database.
Genomic interval133 511-134 290 nt780 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span133 511-135 789 ntGCF_006408945::NZ_JFAO01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006408945::NZ_JFAO01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JFAO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span133 511-135 789 nt2 279 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 511 nt135 789 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BG22_RS00530GCF_006408945#BG22_RS00530
RRNarLCurrent focus
133 511-134 290 nt · Reverse (-)
BG22_RS00535GCF_006408945#BG22_RS00535
HKClassic
134 287-135 789 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006408945#BG22_RS00530The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0658769
Simplified PFAM architecture for RROC_0658769
PFAM domain coverage: 159 / 259 aa (61.4%)
1 aa259 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[199-252]
- Domain count: 2
- Matched identifier: RROC_0658769
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; GerE 199-252 ; GerE 199-252
Cluster members and taxonomy
Representative gene: GCF_006408945#BG22_RS00530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 465 263 · GCF_006408945
AssemblyASM640894v1 · Contighaploid
Genome composition2 807 412 bp · 62,5% GCBifidobacterium sp. UTBIF-78
Signal transduction countsGenes 40 · HK 14 · RR 23CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key