1 Response_reg#1
4-108 aa · 105 aa · 45.1% of protein
Raw token
Response_reg:4:3.58e-18:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BG22_RS03320
Response regulator LytTR family
Bifidobacterium sp. UTBIF-78 · GCF_006408945
ClassRRTypeLytTRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_006408945#BG22_RS03320Stable P2CS identifier used across views.
GenomeGCF_006408945Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-227 aa · 82 aa · 35.2% of protein
Raw token
LytTR:146:0.00000000000000118:227:88:98- Raw architecture: Response_reg:4:3.58e-18:108:108:111#LytTR:146:0.00000000000000118:227:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_006408945::NZ_JFAO01000011.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span104187-104888Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_006408945::NZ_JFAO01000011.1::G00010Context members
BG22_RS03320
Partner locus tags
BG22_RS03320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181163351.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBG22_RS03320Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JFAO01000011.1Sequence record reported by the local genomic context database.
Genomic interval104 187-104 888 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span104 187-104 888 ntGCF_006408945::NZ_JFAO01000011.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006408945::NZ_JFAO01000011.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JFAO01000011.1All displayed genes belong to this local TCS context.
Neighborhood span104 187-104 888 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 187 nt104 888 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BG22_RS03320GCF_006408945#BG22_RS03320
RRLytTRCurrent focus
104 187-104 888 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006408945#BG22_RS03320The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1092736
Simplified PFAM architecture for RROC_1092736
PFAM domain coverage: 191 / 233 aa (82.0%)
1 aa233 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[142-227]
- Domain count: 2
- Matched identifier: RROC_1092736
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 142-227 ; LytTR 142-227
Cluster members and taxonomy
Representative gene: GCF_006408945#BG22_RS03320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 465 263 · GCF_006408945
AssemblyASM640894v1 · Contighaploid
Genome composition2 807 412 bp · 62,5% GCBifidobacterium sp. UTBIF-78
Signal transduction countsGenes 40 · HK 14 · RR 23CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key