1 Response_reg#1
28-128 aa · 101 aa · 41.2% of protein
Raw token
Response_reg:28:0.0000000000000265:128:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EE567_RS02160
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_004919065
ClassRRTypeNarLLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004919065#EE567_RS02160Stable P2CS identifier used across views.
GenomeGCF_004919065Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 245 aa (64.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
183-238 aa · 56 aa · 22.9% of protein
Raw token
HTH_LUXR:183:0.00000000000001:238:56:58- Raw architecture: Response_reg:28:0.0000000000000265:128:101:111#HTH_LUXR:183:0.00000000000001:238:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004919065::NZ_CP054425.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span476317-477054Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEE567_002160RefSeq proteinWP_032743578.1
Context group ID
GCF_004919065::NZ_CP054425.1::G00004Context members
EE567_RS02160
Partner locus tags
EE567_RS02160
Partner old locus tags
EE567_002160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032743578.1Primary protein accession used for annex mappings.
UniProt accessionA0A7D4XZR4Primary UniProt accession resolved in the annex database.
UniProt IDA0A7D4XZR4_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEE567_RS02160Primary locus identifier stored in the genes table.
Old locus tagEE567_002160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP054425.1Sequence record reported by the local genomic context database.
Genomic interval476 317-477 054 nt738 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span476 317-477 054 ntGCF_004919065::NZ_CP054425.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004919065::NZ_CP054425.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP054425.1All displayed genes belong to this local TCS context.
Neighborhood span476 317-477 054 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
476 317 nt477 054 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EE567_RS02160GCF_004919065#EE567_RS02160
RRNarLCurrent focus
476 317-477 054 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004919065#EE567_RS02160The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0794341
Simplified PFAM architecture for RROC_0794341
PFAM domain coverage: 157 / 245 aa (64.1%)
1 aa245 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[28-129] | GerE[184-238]
- Domain count: 2
- Matched identifier: RROC_0794341
- Positioned domains: Response_reg 28-129 ; Response_reg 28-129 ; GerE 184-238 ; GerE 184-238
Cluster members and taxonomy
Representative gene: GCF_004919065#EE567_RS02160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_004919065
AssemblyASM491906v2 · Chromosomehaploid
Genome composition2 608 223 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 39 · HK 11 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key