1 Response_reg#1
4-122 aa · 119 aa · 52.4% of protein
Raw token
Response_reg:4:2.31e-31:122:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EE567_RS02500
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_004919065
ClassRRTypeNarLLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004919065#EE567_RS02500Stable P2CS identifier used across views.
GenomeGCF_004919065Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 227 aa (76.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
162-215 aa · 54 aa · 23.8% of protein
Raw token
HTH_LUXR:162:2.32e-19:215:54:58- Raw architecture: Response_reg:4:2.31e-31:122:119:111#HTH_LUXR:162:2.32e-19:215:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004919065::NZ_CP054425.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span548279-548962Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEE567_002500RefSeq proteinWP_032743802.1
Context group ID
GCF_004919065::NZ_CP054425.1::G00008Context members
EE567_RS02500
Partner locus tags
EE567_RS02500
Partner old locus tags
EE567_002500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032743802.1Primary protein accession used for annex mappings.
UniProt accessionA0A564VHB2Primary UniProt accession resolved in the annex database.
UniProt IDA0A564VHB2_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEE567_RS02500Primary locus identifier stored in the genes table.
Old locus tagEE567_002500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP054425.1Sequence record reported by the local genomic context database.
Genomic interval548 279-548 962 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span548 279-548 962 ntGCF_004919065::NZ_CP054425.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004919065::NZ_CP054425.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP054425.1All displayed genes belong to this local TCS context.
Neighborhood span548 279-548 962 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
548 279 nt548 962 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EE567_RS02500GCF_004919065#EE567_RS02500
RRNarLCurrent focus
548 279-548 962 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004803425#E6L38_RS04675Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1317427
Simplified PFAM architecture for RROC_1317427
PFAM domain coverage: 172 / 228 aa (75.4%)
1 aa228 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-121] | GerE[161-214]
- Domain count: 2
- Matched identifier: RROC_1317427
- Positioned domains: Response_reg 4-121 ; Response_reg 4-121 ; GerE 161-214 ; GerE 161-214
Cluster members and taxonomy
Representative gene: GCF_004803425#E6L38_RS04675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_004919065
AssemblyASM491906v2 · Chromosomehaploid
Genome composition2 608 223 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 39 · HK 11 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key