1 HisKA#1
146-213 aa · 68 aa · 18.5% of protein
Raw token
HisKA:146:0.00000000000689:213:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EAI80_RS04805
Histidine kinase, Classic
Catenibacterium sp. co_0103 · GCF_004168205
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004168205#EAI80_RS04805Stable P2CS identifier used across views.
GenomeGCF_004168205Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 368 aa (48.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
258-366 aa · 109 aa · 29.6% of protein
Raw token
HATPase_c:258:3.47e-29:366:110:109- Raw architecture: HisKA:146:0.00000000000689:213:68:64#HATPase_c:258:3.47e-29:366:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004168205::NZ_RCYB01000018.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11436-13238Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEAI80_04860RefSeq proteinWP_161220278.1
Context group ID
GCF_004168205::NZ_RCYB01000018.1::G00014Context members
EAI80_RS04805EAI80_RS04810
Partner locus tags
EAI80_RS04805EAI80_RS04810
Partner old locus tags
EAI80_04860EAI80_04865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161220278.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEAI80_RS04805Primary locus identifier stored in the genes table.
Old locus tagEAI80_04860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RCYB01000018.1Sequence record reported by the local genomic context database.
Genomic interval11 436-12 542 nt1 107 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 436-13 238 ntGCF_004168205::NZ_RCYB01000018.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004168205::NZ_RCYB01000018.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RCYB01000018.1All displayed genes belong to this local TCS context.
Neighborhood span11 436-13 238 nt1 803 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 436 nt13 238 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EAI80_RS04805GCF_004168205#EAI80_RS04805
HKClassicCurrent focus
11 436-12 542 nt · Reverse (-)
EAI80_RS04810GCF_004168205#EAI80_RS04810
RROmpR
12 555-13 238 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS04805The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2699905
Simplified PFAM architecture for HKOC_2699905
PFAM domain coverage: 176 / 368 aa (47.8%)
1 aa368 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[147-212] | HATPase_c[258-367]
- Domain count: 2
- Matched identifier: HKOC_2699905
- Positioned domains: HisKA 147-212 ; HATPase_c 258-367
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS04805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 478 954 · GCF_004168205
AssemblyASM416820v1 · Contighaploid
Genome composition2 540 390 bp · 35,0% GCCatenibacterium sp. co_0103
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key