1 HAMP#1
160-225 aa · 66 aa · 15.1% of protein
Raw token
HAMP:160:0.000000000459:225:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EAI80_RS03255
Histidine kinase, Classic
Catenibacterium sp. co_0103 · GCF_004168205
ClassHKTypeClassicLength437 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004168205#EAI80_RS03255Stable P2CS identifier used across views.
GenomeGCF_004168205Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length437 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 437 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa437 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-295 aa · 64 aa · 14.6% of protein
Raw token
HisKA:232:0.00000000323:295:64:643 HATPase_c#3
339-433 aa · 95 aa · 21.7% of protein
Raw token
HATPase_c:339:0.000000000000109:433:104:109- Raw architecture: HAMP:160:0.000000000459:225:67:69#HisKA:232:0.00000000323:295:64:64#HATPase_c:339:0.000000000000109:433:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004168205::NZ_RCYB01000011.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20342-22308Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEAI80_03300RefSeq proteinWP_129980908.1
Context group ID
GCF_004168205::NZ_RCYB01000011.1::G00007Context members
EAI80_RS03255EAI80_RS03260
Partner locus tags
EAI80_RS03255EAI80_RS03260
Partner old locus tags
EAI80_03300EAI80_03305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129980908.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEAI80_RS03255Primary locus identifier stored in the genes table.
Old locus tagEAI80_03300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RCYB01000011.1Sequence record reported by the local genomic context database.
Genomic interval20 342-21 655 nt1 314 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 342-22 308 ntGCF_004168205::NZ_RCYB01000011.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004168205::NZ_RCYB01000011.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RCYB01000011.1All displayed genes belong to this local TCS context.
Neighborhood span20 342-22 308 nt1 967 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 342 nt22 308 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EAI80_RS03255GCF_004168205#EAI80_RS03255
HKClassicCurrent focus
20 342-21 655 nt · Reverse (-)
EAI80_RS03260GCF_004168205#EAI80_RS03260
RROmpR
21 655-22 308 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS03255The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2105201
Simplified PFAM architecture for HKOC_2105201
PFAM domain coverage: 158 / 437 aa (36.2%)
1 aa437 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[232-295] | HATPase_c[340-433]
- Domain count: 2
- Matched identifier: HKOC_2105201
- Positioned domains: HisKA 232-295 ; HATPase_c 340-433
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS03255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 478 954 · GCF_004168205
AssemblyASM416820v1 · Contighaploid
Genome composition2 540 390 bp · 35,0% GCCatenibacterium sp. co_0103
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key