1 Response_reg#1
4-115 aa · 112 aa · 50.0% of protein
Raw token
Response_reg:4:9.91e-32:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EAI80_RS04625
Response regulator NarL family
Catenibacterium sp. co_0103 · GCF_004168205
ClassRRTypeNarLLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004168205#EAI80_RS04625Stable P2CS identifier used across views.
GenomeGCF_004168205Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 224 aa (75.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-211 aa · 57 aa · 25.4% of protein
Raw token
HTH_LUXR:155:4.83e-20:211:57:58- Raw architecture: Response_reg:4:9.91e-32:115:112:111#HTH_LUXR:155:4.83e-20:211:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004168205::NZ_RCYB01000017.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10390-12361Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEAI80_04680RefSeq proteinWP_129981110.1
Context group ID
GCF_004168205::NZ_RCYB01000017.1::G00012Context members
EAI80_RS04625EAI80_RS04630
Partner locus tags
EAI80_RS04625EAI80_RS04630
Partner old locus tags
EAI80_04680EAI80_04685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129981110.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEAI80_RS04625Primary locus identifier stored in the genes table.
Old locus tagEAI80_04680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RCYB01000017.1Sequence record reported by the local genomic context database.
Genomic interval10 390-11 064 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 390-12 361 ntGCF_004168205::NZ_RCYB01000017.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004168205::NZ_RCYB01000017.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RCYB01000017.1All displayed genes belong to this local TCS context.
Neighborhood span10 390-12 361 nt1 972 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 390 nt12 361 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EAI80_RS04625GCF_004168205#EAI80_RS04625
RRNarLCurrent focus
10 390-11 064 nt · Reverse (-)
EAI80_RS04630GCF_004168205#EAI80_RS04630
HKClassic
11 057-12 361 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS04625The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1545323
Simplified PFAM architecture for RROC_1545323
PFAM domain coverage: 168 / 224 aa (75.0%)
1 aa224 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[156-211]
- Domain count: 2
- Matched identifier: RROC_1545323
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 156-211 ; GerE 156-211
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS04625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 478 954 · GCF_004168205
AssemblyASM416820v1 · Contighaploid
Genome composition2 540 390 bp · 35,0% GCCatenibacterium sp. co_0103
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key