1 HisKA#1
663-728 aa · 66 aa · 7.5% of protein
Raw token
HisKA:663:0.00000000000000537:728:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D8Q48_RS09295
Histidine kinase, Classic
Ruminococcus sp. B05 · GCF_003628495
ClassHKTypeClassicLength885 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003628495#D8Q48_RS09295Stable P2CS identifier used across views.
GenomeGCF_003628495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length885 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 885 aa (19.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa885 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
775-883 aa · 109 aa · 12.3% of protein
Raw token
HATPase_c:775:0.00000000000103:883:114:109- Raw architecture: HisKA:663:0.00000000000000537:728:66:64#HATPase_c:775:0.00000000000103:883:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003628495::NZ_RBZR01000010.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100869-104267Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD8Q48_09295RefSeq proteinWP_121056341.1
Context group ID
GCF_003628495::NZ_RBZR01000010.1::G00045Context members
D8Q48_RS09295D8Q48_RS09300
Partner locus tags
D8Q48_RS09295D8Q48_RS09300
Partner old locus tags
D8Q48_09295D8Q48_09300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_121056341.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD8Q48_RS09295Primary locus identifier stored in the genes table.
Old locus tagD8Q48_09295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RBZR01000010.1Sequence record reported by the local genomic context database.
Genomic interval100 869-103 526 nt2 658 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span100 869-104 267 ntGCF_003628495::NZ_RBZR01000010.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003628495::NZ_RBZR01000010.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RBZR01000010.1All displayed genes belong to this local TCS context.
Neighborhood span100 869-104 267 nt3 399 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 869 nt104 267 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D8Q48_RS09295GCF_003628495#D8Q48_RS09295
HKClassicCurrent focus
100 869-103 526 nt · Reverse (-)
D8Q48_RS09300GCF_003628495#D8Q48_RS09300
RROmpR
103 572-104 267 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS09295The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0436613
Simplified PFAM architecture for HKOC_0436613
PFAM domain coverage: 174 / 885 aa (19.7%)
1 aa885 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[663-728] | HATPase_c[775-882]
- Domain count: 2
- Matched identifier: HKOC_0436613
- Positioned domains: HisKA 663-728 ; HATPase_c 775-882
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS09295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 448 031 · GCF_003628495
AssemblyASM362849v1 · Contighaploid
Genome composition3 576 560 bp · 38,5% GCRuminococcus sp. B05
Signal transduction countsGenes 81 · HK 42 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key