1 Response_reg#1
4-116 aa · 113 aa · 47.7% of protein
Raw token
Response_reg:4:0.000000000000836:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D8Q48_RS05795
Response regulator LytTR family
Ruminococcus sp. B05 · GCF_003628495
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003628495#D8Q48_RS05795Stable P2CS identifier used across views.
GenomeGCF_003628495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 237 aa (87.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-234 aa · 94 aa · 39.7% of protein
Raw token
LytTR:141:3.37e-16:234:99:98- Raw architecture: Response_reg:4:0.000000000000836:116:116:111#LytTR:141:3.37e-16:234:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003628495::NZ_RBZR01000005.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span80356-81069Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD8Q48_05795RefSeq proteinWP_121055818.1
Context group ID
GCF_003628495::NZ_RBZR01000005.1::G00035Context members
D8Q48_RS05795
Partner locus tags
D8Q48_RS05795
Partner old locus tags
D8Q48_05795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_121055818.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD8Q48_RS05795Primary locus identifier stored in the genes table.
Old locus tagD8Q48_05795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RBZR01000005.1Sequence record reported by the local genomic context database.
Genomic interval80 356-81 069 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span80 356-81 069 ntGCF_003628495::NZ_RBZR01000005.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003628495::NZ_RBZR01000005.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RBZR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span80 356-81 069 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 356 nt81 069 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D8Q48_RS05795GCF_003628495#D8Q48_RS05795
RRLytTRCurrent focus
80 356-81 069 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS05795The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0968814
Simplified PFAM architecture for RROC_0968814
PFAM domain coverage: 205 / 237 aa (86.5%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-118] | LytTR[145-234]
- Domain count: 2
- Matched identifier: RROC_0968814
- Positioned domains: Response_reg 4-118 ; Response_reg 4-118 ; LytTR 145-234 ; LytTR 145-234
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS05795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 448 031 · GCF_003628495
AssemblyASM362849v1 · Contighaploid
Genome composition3 576 560 bp · 38,5% GCRuminococcus sp. B05
Signal transduction countsGenes 81 · HK 42 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key