1 Response_reg#1
6-115 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:6:1.5e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D8Q48_RS01360
Response regulator OmpR family
Ruminococcus sp. B05 · GCF_003628495
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003628495#D8Q48_RS01360Stable P2CS identifier used across views.
GenomeGCF_003628495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 229 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-227 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:152:1.89e-37:227:76:77- Raw architecture: Response_reg:6:1.5e-39:115:111:111#Trans_reg_C:152:1.89e-37:227:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003628495::NZ_RBZR01000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span341515-343636Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD8Q48_01360RefSeq proteinWP_117989177.1
Context group ID
GCF_003628495::NZ_RBZR01000001.1::G00015Context members
D8Q48_RS01360D8Q48_RS01365
Partner locus tags
D8Q48_RS01360D8Q48_RS01365
Partner old locus tags
D8Q48_01360D8Q48_01365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117989177.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD8Q48_RS01360Primary locus identifier stored in the genes table.
Old locus tagD8Q48_01360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RBZR01000001.1Sequence record reported by the local genomic context database.
Genomic interval341 515-342 204 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span341 515-343 636 ntGCF_003628495::NZ_RBZR01000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003628495::NZ_RBZR01000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RBZR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span341 515-343 636 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
341 515 nt343 636 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D8Q48_RS01360GCF_003628495#D8Q48_RS01360
RROmpRCurrent focus
341 515-342 204 nt · Forward (+)
D8Q48_RS01365GCF_003628495#D8Q48_RS01365
HKClassic
342 104-343 636 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS01360The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1261551
Simplified PFAM architecture for RROC_1261551
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1261551
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS01360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 448 031 · GCF_003628495
AssemblyASM362849v1 · Contighaploid
Genome composition3 576 560 bp · 38,5% GCRuminococcus sp. B05
Signal transduction countsGenes 81 · HK 42 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key