1 Response_reg#1
3-117 aa · 115 aa · 47.9% of protein
Raw token
Response_reg:3:3.71e-17:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D8Q48_RS00560
Response regulator LytTR family
Ruminococcus sp. B05 · GCF_003628495
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003628495#D8Q48_RS00560Stable P2CS identifier used across views.
GenomeGCF_003628495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 240 aa (86.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 38.3% of protein
Raw token
LytTR:138:0.000000000000756:229:97:98- Raw architecture: Response_reg:3:3.71e-17:117:117:111#LytTR:138:0.000000000000756:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003628495::NZ_RBZR01000001.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span144797-145519Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD8Q48_00560RefSeq proteinWP_121055048.1
Context group ID
GCF_003628495::NZ_RBZR01000001.1::G00014Context members
D8Q48_RS00560
Partner locus tags
D8Q48_RS00560
Partner old locus tags
D8Q48_00560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_121055048.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD8Q48_RS00560Primary locus identifier stored in the genes table.
Old locus tagD8Q48_00560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RBZR01000001.1Sequence record reported by the local genomic context database.
Genomic interval144 797-145 519 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span144 797-145 519 ntGCF_003628495::NZ_RBZR01000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003628495::NZ_RBZR01000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RBZR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span144 797-145 519 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 797 nt145 519 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D8Q48_RS00560GCF_003628495#D8Q48_RS00560
RRLytTRCurrent focus
144 797-145 519 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS00560The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0888538
Simplified PFAM architecture for RROC_0888538
PFAM domain coverage: 205 / 240 aa (85.4%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-116] | LytTR[139-229]
- Domain count: 2
- Matched identifier: RROC_0888538
- Positioned domains: Response_reg 3-116 ; Response_reg 3-116 ; LytTR 139-229 ; LytTR 139-229
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS00560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 448 031 · GCF_003628495
AssemblyASM362849v1 · Contighaploid
Genome composition3 576 560 bp · 38,5% GCRuminococcus sp. B05
Signal transduction countsGenes 81 · HK 42 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key