1 Response_reg#1
3-107 aa · 105 aa · 44.5% of protein
Raw token
Response_reg:3:5.77e-21:107:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS09255
Response regulator LytTR family
Mediterraneibacter butyricigenes · GCF_003574295
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003574295#KGMB01110_RS09255Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 236 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-218 aa · 85 aa · 36.0% of protein
Raw token
LytTR:134:0.00000000000461:218:90:98- Raw architecture: Response_reg:3:5.77e-21:107:107:111#LytTR:134:0.00000000000461:218:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003574295::NZ_BHGK01000001.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1878062-1878772Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_17910RefSeq proteinWP_170141708.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00015Context members
KGMB01110_RS09255
Partner locus tags
KGMB01110_RS09255
Partner old locus tags
KGMB01110_17910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_170141708.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS09255Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_17910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 878 062-1 878 772 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 878 062-1 878 772 ntGCF_003574295::NZ_BHGK01000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 878 062-1 878 772 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 878 062 nt1 878 772 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KGMB01110_RS09255GCF_003574295#KGMB01110_RS09255
RRLytTRCurrent focus
1 878 062-1 878 772 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS09255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0995759
Simplified PFAM architecture for RROC_0995759
PFAM domain coverage: 197 / 236 aa (83.5%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[134-220]
- Domain count: 2
- Matched identifier: RROC_0995759
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 134-220 ; LytTR 134-220
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS09255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key