1 dCache_1#1
82-272 aa · 191 aa · 31.8% of protein
Raw token
dCache_1:82:0.0000000000137:272:197:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS06560
Histidine kinase, Classic
Mediterraneibacter butyricigenes · GCF_003574295
ClassHKTypeClassicLength601 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003574295#KGMB01110_RS06560Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length601 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage379 / 601 aa (63.1%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa601 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-451 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:372:2.16e-32:451:80:803 HATPase_c#3
467-574 aa · 108 aa · 18.0% of protein
Raw token
HATPase_c:467:3.97e-16:574:111:109- Raw architecture: dCache_1:82:0.0000000000137:272:197:195#His_kinase:372:2.16e-32:451:80:80#HATPase_c:467:3.97e-16:574:111:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003574295::NZ_BHGK01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1338864-1342331Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_12650RefSeq proteinWP_117603274.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00006Context members
KGMB01110_RS06560KGMB01110_RS06565
Partner locus tags
KGMB01110_RS06560KGMB01110_RS06565
Partner old locus tags
KGMB01110_12650KGMB01110_12660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117603274.1Primary protein accession used for annex mappings.
UniProt accessionA0A391PAN8Primary UniProt accession resolved in the annex database.
UniProt IDA0A391PAN8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS06560Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_12650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 338 864-1 340 669 nt1 806 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 338 864-1 342 331 ntGCF_003574295::NZ_BHGK01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 338 864-1 342 331 nt3 468 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 338 864 nt1 342 331 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KGMB01110_RS06560GCF_003574295#KGMB01110_RS06560
HKClassicCurrent focus
1 338 864-1 340 669 nt · Reverse (-)
KGMB01110_RS06565GCF_003574295#KGMB01110_RS06565
RRunclassified
1 340 727-1 342 331 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS06560The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1048769
Simplified PFAM architecture for HKOC_1048769
PFAM domain coverage: 420 / 601 aa (69.9%)
1 aa601 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[40-271] | His_kinase[372-451] | HATPase_c[468-575]
- Domain count: 3
- Matched identifier: HKOC_1048769
- Positioned domains: dCache_1 40-271 ; His_kinase 372-451 ; HATPase_c 468-575
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS06560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key