1 KdpD#1
24-232 aa · 209 aa · 23.3% of protein
Raw token
KdpD:24:5.23e-136:232:209:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS09085
Histidine kinase, Classic
Mediterraneibacter butyricigenes · GCF_003574295
ClassHKTypeClassicLength898 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003574295#KGMB01110_RS09085Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length898 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 898 aa (43.4%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa898 aa
Domain-by-domain annotation3 items
2 HisKA#2
670-737 aa · 68 aa · 7.6% of protein
Raw token
HisKA:670:0.0000000000102:737:68:643 HATPase_c#3
781-893 aa · 113 aa · 12.6% of protein
Raw token
HATPase_c:781:3.32e-29:893:113:109- Raw architecture: KdpD:24:5.23e-136:232:209:210#HisKA:670:0.0000000000102:737:68:64#HATPase_c:781:3.32e-29:893:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003574295::NZ_BHGK01000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1832733-1836123Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_17560RefSeq proteinWP_119298079.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00012Context members
KGMB01110_RS09085KGMB01110_RS09090
Partner locus tags
KGMB01110_RS09085KGMB01110_RS09090
Partner old locus tags
KGMB01110_17560KGMB01110_17570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_119298079.1Primary protein accession used for annex mappings.
UniProt accessionA0A391P2G7Primary UniProt accession resolved in the annex database.
UniProt IDA0A391P2G7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS09085Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_17560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 832 733-1 835 429 nt2 697 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 832 733-1 836 123 ntGCF_003574295::NZ_BHGK01000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 832 733-1 836 123 nt3 391 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 832 733 nt1 836 123 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KGMB01110_RS09085GCF_003574295#KGMB01110_RS09085
HKClassicCurrent focus
1 832 733-1 835 429 nt · Forward (+)
KGMB01110_RS09090GCF_003574295#KGMB01110_RS09090
RROmpR
1 835 422-1 836 123 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS09085The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0409300
Simplified PFAM architecture for HKOC_0409300
PFAM domain coverage: 493 / 898 aa (54.9%)
1 aa898 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[24-232] | DUF4118[404-509] | HisKA[670-737] | HATPase_c[782-891]
- Domain count: 4
- Matched identifier: HKOC_0409300
- Positioned domains: KdpD 24-232 ; DUF4118 404-509 ; HisKA 670-737 ; HATPase_c 782-891
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS09085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key