1 Response_reg#1
4-115 aa · 112 aa · 21.5% of protein
Raw token
Response_reg:4:5.11e-27:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCZ78_RS02350
Response regulator, unclassified
Blautia sp. · GCF_003488505
ClassRRTypeunclassifiedLength521 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003488505#DCZ78_RS02350Stable P2CS identifier used across views.
GenomeGCF_003488505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length521 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 521 aa (37.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa521 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
422-468 aa · 47 aa · 9.0% of protein
Raw token
HTH_AraC:422:0.000000379:468:47:423 HTH_AraC#3
483-517 aa · 35 aa · 6.7% of protein
Raw token
HTH_AraC:483:0.0000117:517:35:42- Raw architecture: Response_reg:4:5.11e-27:115:112:111#HTH_AraC:422:0.000000379:468:47:42#HTH_AraC:483:0.0000117:517:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003488505::NZ_DNLJ01000011.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span97378-100763Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDCZ78_02365RefSeq proteinWP_118061941.1
Context group ID
GCF_003488505::NZ_DNLJ01000011.1::G00028Context members
DCZ78_RS02345DCZ78_RS02350
Partner locus tags
DCZ78_RS02345DCZ78_RS02350
Partner old locus tags
DCZ78_02360DCZ78_02365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118061941.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCZ78_RS02350Primary locus identifier stored in the genes table.
Old locus tagDCZ78_02365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DNLJ01000011.1Sequence record reported by the local genomic context database.
Genomic interval99 198-100 763 nt1 566 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span97 378-100 763 ntGCF_003488505::NZ_DNLJ01000011.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003488505::NZ_DNLJ01000011.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DNLJ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span97 378-100 763 nt3 386 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
97 378 nt100 763 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DCZ78_RS02345GCF_003488505#DCZ78_RS02345
HKClassic
97 378-99 201 nt · Reverse (-)
DCZ78_RS02350GCF_003488505#DCZ78_RS02350
RRunclassifiedCurrent focus
99 198-100 763 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003488505#DCZ78_RS02350The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0124759
Simplified PFAM architecture for RROC_0124759
PFAM domain coverage: 189 / 521 aa (36.3%)
1 aa521 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[442-518]
- Domain count: 2
- Matched identifier: RROC_0124759
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 442-518 ; HTH_18 442-518
Cluster members and taxonomy
Representative gene: GCF_003488505#DCZ78_RS02350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 955 243 · GCF_003488505
AssemblyASM348850v1 · Scaffoldhaploid
Genome composition3 150 580 bp · 44,5% GCBlautia sp.
Signal transduction countsGenes 63 · HK 29 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key