1 dCache_1#1
46-286 aa · 241 aa · 40.5% of protein
Raw token
dCache_1:46:6.54e-22:286:246:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCZ78_RS02300
Histidine kinase, Classic
Blautia sp. · GCF_003488505
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003488505#DCZ78_RS02300Stable P2CS identifier used across views.
GenomeGCF_003488505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage500 / 595 aa (84.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation4 items
2 HAMP#2
305-374 aa · 70 aa · 11.8% of protein
Raw token
HAMP:305:0.0000000000000158:374:70:693 His_kinase#3
389-468 aa · 80 aa · 13.4% of protein
Raw token
His_kinase:389:6.1e-34:468:80:804 HATPase_c#4
480-588 aa · 109 aa · 18.3% of protein
Raw token
HATPase_c:480:0.00000000000000493:588:113:109- Raw architecture: dCache_1:46:6.54e-22:286:246:195#HAMP:305:0.0000000000000158:374:70:69#His_kinase:389:6.1e-34:468:80:80#HATPase_c:480:0.00000000000000493:588:113:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003488505::NZ_DNLJ01000011.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84133-87533Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDCZ78_02310RefSeq proteinWP_119247782.1
Context group ID
GCF_003488505::NZ_DNLJ01000011.1::G00027Context members
DCZ78_RS02295DCZ78_RS02300
Partner locus tags
DCZ78_RS02295DCZ78_RS02300
Partner old locus tags
DCZ78_02305DCZ78_02310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119247782.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCZ78_RS02300Primary locus identifier stored in the genes table.
Old locus tagDCZ78_02310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DNLJ01000011.1Sequence record reported by the local genomic context database.
Genomic interval85 746-87 533 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 133-87 533 ntGCF_003488505::NZ_DNLJ01000011.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003488505::NZ_DNLJ01000011.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DNLJ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span84 133-87 533 nt3 401 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 133 nt87 533 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DCZ78_RS02295GCF_003488505#DCZ78_RS02295
RRunclassified
84 133-85 749 nt · Forward (+)
DCZ78_RS02300GCF_003488505#DCZ78_RS02300
HKClassicCurrent focus
85 746-87 533 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003488505#DCZ78_RS02300The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1081888
Simplified PFAM architecture for HKOC_1081888
PFAM domain coverage: 474 / 595 aa (79.7%)
1 aa595 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[52-286] | HAMP[321-374] | His_kinase[389-468] | HATPase_c[484-588]
- Domain count: 4
- Matched identifier: HKOC_1081888
- Positioned domains: dCache_1 52-286 ; HAMP 321-374 ; His_kinase 389-468 ; HATPase_c 484-588
Cluster members and taxonomy
Representative gene: GCF_003488505#DCZ78_RS02300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 955 243 · GCF_003488505
AssemblyASM348850v1 · Scaffoldhaploid
Genome composition3 150 580 bp · 44,5% GCBlautia sp.
Signal transduction countsGenes 63 · HK 29 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key