1 Response_reg#1
6-109 aa · 104 aa · 13.2% of protein
Raw token
Response_reg:6:2.48e-26:109:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS17795
Response regulator, RpfG family
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassRRTypeRpfGLength789 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481925#DXB00_RS17795Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length789 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage376 / 789 aa (47.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa789 aa
Domain-by-domain annotation3 items
2 HD#2
164-298 aa · 135 aa · 17.1% of protein
Raw token
HD:164:0.00000000000000215:298:135:1103 GGDEF#3
645-781 aa · 137 aa · 17.4% of protein
Raw token
GGDEF:645:1.14e-29:781:152:160- Raw architecture: Response_reg:6:2.48e-26:109:105:111#HD:164:0.00000000000000215:298:135:110#GGDEF:645:1.14e-29:781:152:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481925::NZ_QUMC01000029.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span23800-26169Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_13350RefSeq proteinWP_118729922.1
Context group ID
GCF_003481925::NZ_QUMC01000029.1::G00022Context members
DXB00_RS17795
Partner locus tags
DXB00_RS17795
Partner old locus tags
DXB00_13350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729922.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS17795Primary locus identifier stored in the genes table.
Old locus tagDXB00_13350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000029.1Sequence record reported by the local genomic context database.
Genomic interval23 800-26 169 nt2 370 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 800-26 169 ntGCF_003481925::NZ_QUMC01000029.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000029.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000029.1All displayed genes belong to this local TCS context.
Neighborhood span23 800-26 169 nt2 370 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 800 nt26 169 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB00_RS17795GCF_003481925#DXB00_RS17795
RRRpfGCurrent focus
23 800-26 169 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS15910Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0016571
Simplified PFAM architecture for RROC_0016571
PFAM domain coverage: 389 / 789 aa (49.3%)
1 aa789 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[6-110] | HD_5[176-317] | GGDEF[646-787]
- Domain count: 3
- Matched identifier: RROC_0016571
- Positioned domains: Response_reg 6-110 ; Response_reg 6-110 ; HD_5 176-317 ; HD_5 176-317 ; GGDEF 646-787 ; GGDEF 646-787
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS15910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key