Gene detail

DXB00_RS17280

Histidine kinase, Hybrid

Butyricicoccus sp. OF10-2 · GCF_003481925

Open genome Open selected cluster RefSeq

ClassHKTypeHybridLength392 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_003481925#DXB00_RS17280Stable P2CS identifier used across views.

GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus

Selected clusterHKOC_0253750Run 6 · 2 sequences · id 100% · cov 80%

External referencesWP_243107203.1 · MIST4 DXB00_RS17280RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_cResponse_reg

Protein length392 aaLength used to scale native and Biotite-like views.

Annotated domains33 with usable coordinates.

Domain coverage301 / 392 aa (76.8%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa392 aa

Domain-by-domain annotation3 items

1 HisKA#1

8-73 aa · 66 aa · 16.8% of protein

Raw tokenHisKA:8:7.48e-16:73:66:64

2 HATPase_c#2

122-239 aa · 118 aa · 30.1% of protein

Raw tokenHATPase_c:122:4.22e-28:239:118:109

3 Response_reg#3

263-379 aa · 117 aa · 29.8% of protein

Raw tokenResponse_reg:263:8.57e-29:379:117:111

Raw architecture: HisKA:8:7.48e-16:73:66:64#HATPase_c:122:4.22e-28:239:118:109#Response_reg:263:8.57e-29:379:117:111
Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_003481925::NZ_QUMC01000018.1::G00014

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span47246-48424Genomic interval covered by the local TCS group.

Identifiers

RefSeq proteinWP_243107203.1

Context group IDGCF_003481925::NZ_QUMC01000018.1::G00014

Context members

DXB00_RS17280

Partner locus tags

DXB00_RS17280

Partner protein IDs

WP_243107203.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_243107203.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagDXB00_RS17280Primary locus identifier stored in the genes table.

Old locus tagUnavailableNo previous locus tag available for this gene.

Contig / repliconNZ_QUMC01000018.1Sequence record reported by the local genomic context database.

Genomic interval47 246-48 424 nt1 179 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span47 246-48 424 ntGCF_003481925::NZ_QUMC01000018.1::G00014

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_003481925::NZ_QUMC01000018.1::G00014

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_QUMC01000018.1All displayed genes belong to this local TCS context.

Neighborhood span47 246-48 424 nt1 179 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

47 246 nt48 424 nt

+-DXB00_RS17280

Neighborhood gene cards

1 gene in the current local neighborhood.

DXB00_RS17280GCF_003481925#DXB00_RS17280

HKHybridCurrent focus

47 246-48 424 nt · Forward (+)

RefSeq WP_243107203.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0253750HK

Run 62 sequencesid 100%cov 80%

PFAM GGDEF + HisKA + HATPase_c + Response_reg

Representative GCF_003480365#DW806_RS12385

Selected clusterHKOC_0253750Run 6 · HK · 2 sequences

Representative sequenceGCF_003480365#DW806_RS12385Use this link to inspect the representative gene detail.

PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_0253750

Simplified PFAM architecture for HKOC_0253750

PFAM domain coverage: 447 / 1058 aa (42.2%)

1 aa1058 aa

GGDEFHisKAHATPase_cResponse_reg

Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
Raw architecture: GGDEF[199-347] | HisKA[674-739] | HATPase_c[789-904] | Response_reg[929-1044]
Domain count: 4
Matched identifier: HKOC_0253750
Positioned domains: GGDEF 199-347 ; HisKA 674-739 ; HATPase_c 789-904 ; Response_reg 929-1044

Cluster members and taxonomy

Representative gene: GCF_003480365#DW806_RS12385

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925

AssemblyASM348192v1 · Scaffoldhaploid

Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2

Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

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