1 HisKA_3#1
232-299 aa · 68 aa · 15.8% of protein
Raw token
HisKA_3:232:1.39e-21:299:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS17040
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength430 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS17040Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length430 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 430 aa (35.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa430 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
339-424 aa · 86 aa · 20.0% of protein
Raw token
HATPase_c:339:7.71e-16:424:109:109- Raw architecture: HisKA_3:232:1.39e-21:299:68:68#HATPase_c:339:7.71e-16:424:109:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000005.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115988-117950Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003481925::NZ_QUMC01000005.1::G00035Context members
DXB00_RS04620DXB00_RS17040
Partner locus tags
DXB00_RS04620DXB00_RS17040
Partner old locus tags
DXB00_04620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243022616.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS17040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QUMC01000005.1Sequence record reported by the local genomic context database.
Genomic interval116 658-117 950 nt1 293 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 988-117 950 ntGCF_003481925::NZ_QUMC01000005.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000005.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000005.1All displayed genes belong to this local TCS context.
Neighborhood span115 988-117 950 nt1 963 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 988 nt117 950 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS04620GCF_003481925#DXB00_RS04620
RRNarL
115 988-116 665 nt · Reverse (-)
DXB00_RS17040GCF_003481925#DXB00_RS17040
HKClassicCurrent focus
116 658-117 950 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS15610Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2173837
Simplified PFAM architecture for HKOC_2173837
PFAM domain coverage: 153 / 430 aa (35.6%)
1 aa430 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[232-299] | HATPase_c[339-423]
- Domain count: 2
- Matched identifier: HKOC_2173837
- Positioned domains: HisKA_3 232-299 ; HATPase_c 339-423
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS15610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key