1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:6.53e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS15840
Response regulator OmpR family
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS15840Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 226 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.6% of protein
Raw token
Trans_reg_C:147:4.65e-33:222:77:77- Raw architecture: Response_reg:5:6.53e-40:114:111:111#Trans_reg_C:147:4.65e-33:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000051.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2126-4261Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_15845RefSeq proteinWP_110435133.1
Context group ID
GCF_003481925::NZ_QUMC01000051.1::G00036Context members
DXB00_RS15835DXB00_RS15840
Partner locus tags
DXB00_RS15835DXB00_RS15840
Partner old locus tags
DXB00_15840DXB00_15845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_110435133.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4VTY2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4VTY2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS15840Primary locus identifier stored in the genes table.
Old locus tagDXB00_15845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000051.1Sequence record reported by the local genomic context database.
Genomic interval3 581-4 261 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 126-4 261 ntGCF_003481925::NZ_QUMC01000051.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000051.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000051.1All displayed genes belong to this local TCS context.
Neighborhood span2 126-4 261 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 126 nt4 261 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS15835GCF_003481925#DXB00_RS15835
HKClassic
2 126-3 577 nt · Reverse (-)
DXB00_RS15840GCF_003481925#DXB00_RS15840
RROmpRCurrent focus
3 581-4 261 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003096535#C7386_RS00575Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1420218
Simplified PFAM architecture for RROC_1420218
PFAM domain coverage: 186 / 226 aa (82.3%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1420218
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_003096535#C7386_RS00575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key