1 HAMP#1
179-249 aa · 71 aa · 14.7% of protein
Raw token
HAMP:179:2.53e-16:249:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS15835
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS15835Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 483 aa (51.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-319 aa · 65 aa · 13.5% of protein
Raw token
HisKA:255:1.41e-16:319:65:643 HATPase_c#3
364-475 aa · 112 aa · 23.2% of protein
Raw token
HATPase_c:364:7.87e-31:475:113:109- Raw architecture: HAMP:179:2.53e-16:249:71:69#HisKA:255:1.41e-16:319:65:64#HATPase_c:364:7.87e-31:475:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000051.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2126-4261Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_15840RefSeq proteinWP_118728957.1
Context group ID
GCF_003481925::NZ_QUMC01000051.1::G00036Context members
DXB00_RS15835DXB00_RS15840
Partner locus tags
DXB00_RS15835DXB00_RS15840
Partner old locus tags
DXB00_15840DXB00_15845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118728957.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS15835Primary locus identifier stored in the genes table.
Old locus tagDXB00_15840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000051.1Sequence record reported by the local genomic context database.
Genomic interval2 126-3 577 nt1 452 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 126-4 261 ntGCF_003481925::NZ_QUMC01000051.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000051.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000051.1All displayed genes belong to this local TCS context.
Neighborhood span2 126-4 261 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 126 nt4 261 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS15835GCF_003481925#DXB00_RS15835
HKClassicCurrent focus
2 126-3 577 nt · Reverse (-)
DXB00_RS15840GCF_003481925#DXB00_RS15840
RROmpR
3 581-4 261 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS02155Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1595987
Simplified PFAM architecture for HKOC_1595987
PFAM domain coverage: 227 / 483 aa (47.0%)
1 aa483 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[197-247] | HisKA[255-319] | HATPase_c[364-474]
- Domain count: 3
- Matched identifier: HKOC_1595987
- Positioned domains: HAMP 197-247 ; HisKA 255-319 ; HATPase_c 364-474
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS02155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key