1 Response_reg#1
7-120 aa · 114 aa · 45.1% of protein
Raw token
Response_reg:7:1.17e-20:120:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS14415
Response regulator Spo0A family
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassRRTypeSpo0ALength253 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481925#DXB00_RS14415Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 253 aa (86.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
142-245 aa · 104 aa · 41.1% of protein
Raw token
Spo0A_C:142:1.41e-68:245:104:104- Raw architecture: Response_reg:7:1.17e-20:120:114:111#Spo0A_C:142:1.41e-68:245:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481925::NZ_QUMC01000035.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6659-7420Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_14420RefSeq proteinWP_117492157.1
Context group ID
GCF_003481925::NZ_QUMC01000035.1::G00027Context members
DXB00_RS14415
Partner locus tags
DXB00_RS14415
Partner old locus tags
DXB00_14420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117492157.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS14415Primary locus identifier stored in the genes table.
Old locus tagDXB00_14420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000035.1Sequence record reported by the local genomic context database.
Genomic interval6 659-7 420 nt762 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 659-7 420 ntGCF_003481925::NZ_QUMC01000035.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000035.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000035.1All displayed genes belong to this local TCS context.
Neighborhood span6 659-7 420 nt762 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 659 nt7 420 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB00_RS14415GCF_003481925#DXB00_RS14415
RRSpo0ACurrent focus
6 659-7 420 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481925#DXB00_RS14415The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0697281
Simplified PFAM architecture for RROC_0697281
PFAM domain coverage: 217 / 253 aa (85.8%)
1 aa253 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[7-119] | Spo0A_C[142-245]
- Domain count: 2
- Matched identifier: RROC_0697281
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; Spo0A_C 142-245 ; Spo0A_C 142-245
Cluster members and taxonomy
Representative gene: GCF_003481925#DXB00_RS14415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key