1 Response_reg#1
4-110 aa · 107 aa · 19.9% of protein
Raw token
Response_reg:4:1.44e-31:110:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS14320
Response regulator, unclassified
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassRRTypeunclassifiedLength537 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS14320Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length537 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 537 aa (34.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa537 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
445-484 aa · 40 aa · 7.4% of protein
Raw token
HTH_AraC:445:0.000000000406:484:40:423 HTH_AraC#3
497-534 aa · 38 aa · 7.1% of protein
Raw token
HTH_AraC:497:0.00000453:534:38:42- Raw architecture: Response_reg:4:1.44e-31:110:107:111#HTH_AraC:445:0.000000000406:484:40:42#HTH_AraC:497:0.00000453:534:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000034.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16694-19325Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_14325RefSeq proteinWP_158578244.1
Context group ID
GCF_003481925::NZ_QUMC01000034.1::G00026Context members
DXB00_RS14315DXB00_RS14320
Partner locus tags
DXB00_RS14315DXB00_RS14320
Partner old locus tags
DXB00_14320DXB00_14325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158578244.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ1DZW6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ1DZW6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS14320Primary locus identifier stored in the genes table.
Old locus tagDXB00_14325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000034.1Sequence record reported by the local genomic context database.
Genomic interval17 712-19 325 nt1 614 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 694-19 325 ntGCF_003481925::NZ_QUMC01000034.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000034.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000034.1All displayed genes belong to this local TCS context.
Neighborhood span16 694-19 325 nt2 632 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 694 nt19 325 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS14315GCF_003481925#DXB00_RS14315
HKClassic
16 694-17 698 nt · Reverse (-)
DXB00_RS14320GCF_003481925#DXB00_RS14320
RRunclassifiedCurrent focus
17 712-19 325 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS00085Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0096726
Simplified PFAM architecture for RROC_0096726
PFAM domain coverage: 189 / 537 aa (35.2%)
1 aa537 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[457-534]
- Domain count: 2
- Matched identifier: RROC_0096726
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 457-534 ; HTH_18 457-534
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS00085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key