1 His_kinase#1
119-198 aa · 80 aa · 24.0% of protein
Raw token
His_kinase:119:7.98e-35:198:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS14315
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS14315Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 334 aa (59.9%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
210-329 aa · 120 aa · 35.9% of protein
Raw token
HATPase_c:210:0.00000000000000215:329:120:109- Raw architecture: His_kinase:119:7.98e-35:198:80:80#HATPase_c:210:0.00000000000000215:329:120:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000034.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16694-19325Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_14320RefSeq proteinWP_118728721.1
Context group ID
GCF_003481925::NZ_QUMC01000034.1::G00026Context members
DXB00_RS14315DXB00_RS14320
Partner locus tags
DXB00_RS14315DXB00_RS14320
Partner old locus tags
DXB00_14320DXB00_14325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118728721.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ1E041Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ1E041_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS14315Primary locus identifier stored in the genes table.
Old locus tagDXB00_14320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000034.1Sequence record reported by the local genomic context database.
Genomic interval16 694-17 698 nt1 005 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 694-19 325 ntGCF_003481925::NZ_QUMC01000034.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000034.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000034.1All displayed genes belong to this local TCS context.
Neighborhood span16 694-19 325 nt2 632 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 694 nt19 325 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS14315GCF_003481925#DXB00_RS14315
HKClassicCurrent focus
16 694-17 698 nt · Reverse (-)
DXB00_RS14320GCF_003481925#DXB00_RS14320
RRunclassified
17 712-19 325 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS00080Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2850191
Simplified PFAM architecture for HKOC_2850191
PFAM domain coverage: 193 / 334 aa (57.8%)
1 aa334 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[119-198] | HATPase_c[218-330]
- Domain count: 2
- Matched identifier: HKOC_2850191
- Positioned domains: His_kinase 119-198 ; HATPase_c 218-330
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS00080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key